Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46905 * 109.47308 * 2 1 4 4 C 1.46899 * 110.99723 * 287.94947 * 3 2 1 5 5 C 1.50696 * 109.47424 * 160.36451 * 4 3 2 6 6 H 1.08005 * 119.99991 * 4.90079 * 5 4 3 7 7 C 1.37877 * 120.00415 * 184.90304 * 5 4 3 8 8 N 1.31506 * 120.00183 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99665 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47290 * 90.00114 * 9 7 5 11 11 H 1.48500 * 109.47169 * 209.99912 * 9 7 5 12 12 H 1.48503 * 109.47296 * 330.00028 * 9 7 5 13 13 C 1.46900 * 111.00137 * 163.99226 * 3 2 1 14 14 C 1.50701 * 109.47129 * 293.95184 * 13 3 2 15 15 C 1.38627 * 120.80041 * 105.00386 * 14 13 3 16 16 C 1.38191 * 119.19087 * 180.02562 * 15 14 13 17 17 N 1.31870 * 120.82182 * 0.02562 * 16 15 14 18 18 C 1.31838 * 121.75075 * 359.97438 * 17 16 15 19 19 C 1.38464 * 120.72786 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.44477 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.47365 * 299.28989 * 1 2 3 22 22 H 1.08997 * 109.47005 * 59.29014 * 1 2 3 23 23 H 1.08999 * 109.47148 * 179.28698 * 1 2 3 24 24 H 1.08998 * 109.47853 * 239.99571 * 2 1 3 25 25 H 1.09007 * 109.47468 * 119.99414 * 2 1 3 26 26 H 1.09004 * 109.47106 * 280.36383 * 4 3 2 27 27 H 1.09003 * 109.47374 * 40.35630 * 4 3 2 28 28 H 0.97003 * 120.00475 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46803 * 173.95264 * 13 3 2 30 30 H 1.08998 * 109.46885 * 53.95365 * 13 3 2 31 31 H 1.07999 * 120.40220 * 0.03723 * 15 14 13 32 32 H 1.08003 * 119.58359 * 179.71638 * 16 15 14 33 33 H 1.08006 * 119.63577 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7966 2.0222 -1.3047 5 6 1.8480 3.5201 -1.1476 6 1 2.1063 3.9544 -0.1931 7 6 1.5651 4.3361 -2.2224 8 7 1.6094 5.6432 -2.0851 9 14 1.1190 3.5849 -3.8735 10 1 -0.3517 3.3936 -3.9491 11 1 1.5569 4.4920 -4.9646 12 1 1.7970 2.2717 -4.0193 13 6 3.4380 1.4419 0.3782 14 6 3.5932 1.0068 1.8126 15 6 4.1065 -0.2428 2.1238 16 6 4.2339 -0.6078 3.4505 17 7 3.8739 0.2158 4.4155 18 6 3.3819 1.4118 4.1592 19 6 3.2247 1.8474 2.8543 20 9 2.7194 3.0740 2.5983 21 1 -0.3634 0.5028 0.8963 22 1 -0.3633 0.5248 -0.8835 23 1 -0.3633 -1.0276 -0.0128 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5714 1.7032 -2.0020 27 1 0.8194 1.7304 -1.6893 28 1 1.4108 6.2174 -2.8413 29 1 3.8030 2.4629 0.2666 30 1 4.0130 0.7779 -0.2672 31 1 4.4033 -0.9227 1.3389 32 1 4.6288 -1.5816 3.7001 33 1 3.0975 2.0586 4.9761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449009122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = -5.144005 kcal Electronic energy + Delta-G solvation = -17006.648269 eV Core-core repulsion = 14175.055124 eV Total energy + Delta-G solvation = -2831.593145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.47048 -39.98036 -37.25074 -33.10316 -32.44452 -30.79184 -30.20010 -27.89073 -25.31052 -23.40013 -22.43070 -21.97568 -19.84373 -17.23348 -17.10143 -16.72367 -16.33842 -15.60980 -14.84918 -14.55840 -14.13337 -13.99035 -13.64033 -13.36781 -13.19892 -12.99726 -12.42857 -12.23529 -11.72352 -11.69868 -11.37623 -11.10438 -10.89533 -10.52994 -10.21904 -9.93029 -9.58109 -9.50128 -9.24957 -8.76281 -8.56800 -7.49770 -6.05099 -4.02317 1.04830 1.18702 3.26063 3.34022 3.34603 3.70553 4.25409 4.40327 4.52070 4.60001 4.83335 4.86520 5.02285 5.26531 5.47154 5.48564 5.58517 5.74181 5.87065 5.91734 5.96104 6.12323 6.19551 6.30292 6.38584 6.63909 6.74569 6.77914 6.84497 7.58217 7.80973 7.86568 7.91854 8.63976 9.06891 9.56140 11.08126 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.007271 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.041639 B = 3850.211703 C = 4309.520256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.519 5.519 4 C 0.163 3.837 5 C -0.508 4.508 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.096 3.904 14 C -0.061 4.061 15 C -0.145 4.145 16 C 0.076 3.924 17 N -0.466 5.466 18 C 0.062 3.938 19 C 0.080 3.920 20 F -0.110 7.110 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.024 0.976 25 H 0.061 0.939 26 H -0.011 1.011 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.103 0.897 30 H 0.039 0.961 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -12.659 7.344 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.244 5.244 4 C 0.037 3.963 5 C -0.546 4.546 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.031 4.031 14 C -0.070 4.070 15 C -0.165 4.165 16 C -0.081 4.081 17 N -0.174 5.174 18 C -0.096 4.096 19 C 0.058 3.942 20 F -0.088 7.088 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.007 0.993 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.618 -12.434 8.425 15.449 hybrid contribution -0.035 -0.248 -2.536 2.549 sum 3.583 -12.683 5.889 14.435 Atomic orbital electron populations 1.21741 0.95248 1.00164 1.02995 1.22102 0.96322 0.90584 0.99306 1.62013 1.14473 1.14452 1.33415 1.20236 0.95530 0.96126 0.84422 1.21055 1.46643 0.88060 0.98883 0.89863 1.24888 0.95225 0.94704 0.98425 1.69890 1.49668 1.02840 1.31344 0.86920 0.79224 0.79416 0.84509 1.20151 1.21175 1.19421 1.20960 0.91016 1.02872 0.88275 1.20679 0.95904 0.93432 0.97003 1.22034 1.00386 0.95841 0.98258 1.22671 0.97742 0.99145 0.88499 1.67646 1.09927 1.03017 1.36851 1.22872 0.98503 0.93941 0.94318 1.18700 0.98463 0.82820 0.94226 1.91629 1.83847 1.38603 1.94767 0.92144 0.92237 0.93354 0.95799 0.92075 0.99319 0.95217 0.92678 0.87860 0.94252 0.84406 0.82483 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.99 37.15 0.37 -1.94 16 2 C 0.05 0.76 5.55 -3.83 -0.02 0.74 16 3 N -0.52 -10.58 4.37 -237.52 -1.04 -11.62 16 4 C 0.16 3.86 3.65 -4.98 -0.02 3.84 16 5 C -0.51 -14.31 9.17 -34.44 -0.32 -14.62 16 6 H 0.08 2.58 7.89 -52.48 -0.41 2.17 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.87 21.28 27.37 -169.99 -4.65 16.63 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.31 6.69 56.52 0.38 -5.93 16 13 C 0.10 1.76 4.70 -4.98 -0.02 1.73 16 14 C -0.06 -0.96 4.50 -104.26 -0.47 -1.43 16 15 C -0.14 -1.79 8.80 -39.45 -0.35 -2.14 16 16 C 0.08 0.90 11.18 -17.55 -0.20 0.70 16 17 N -0.47 -6.39 10.36 -13.20 -0.14 -6.53 16 18 C 0.06 0.87 11.17 -17.47 -0.20 0.68 16 19 C 0.08 1.32 7.29 -39.28 -0.29 1.03 16 20 F -0.11 -2.14 16.88 2.25 0.04 -2.11 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 25 H 0.06 0.93 6.15 -51.93 -0.32 0.61 16 26 H -0.01 -0.26 7.40 -51.93 -0.38 -0.64 16 27 H 0.03 0.71 5.40 -51.93 -0.28 0.43 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 2.15 7.31 -51.93 -0.38 1.77 16 30 H 0.04 0.65 7.99 -51.93 -0.41 0.23 16 31 H 0.14 1.37 8.05 -52.49 -0.42 0.95 16 32 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -31.16 280.79 -6.61 -37.77 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.22 Total: -2.14 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.60 Total: -9.52 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.40 Total: -44.86 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.65 Total: 16.63 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.16 -6.61 -37.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449009122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.624 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds