Wall clock time and date at job start Sun Mar 29 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46905 * 109.47308 * 2 1 4 4 C 1.46899 * 110.99723 * 287.94947 * 3 2 1 5 5 C 1.50696 * 109.47424 * 160.36451 * 4 3 2 6 6 H 1.08005 * 119.99991 * 4.90079 * 5 4 3 7 7 C 1.37877 * 120.00415 * 184.90304 * 5 4 3 8 8 N 1.31506 * 120.00183 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99665 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47290 * 90.00114 * 9 7 5 11 11 H 1.48500 * 109.47169 * 209.99912 * 9 7 5 12 12 H 1.48503 * 109.47296 * 330.00028 * 9 7 5 13 13 C 1.46900 * 111.00137 * 163.99226 * 3 2 1 14 14 C 1.50701 * 109.47129 * 293.95184 * 13 3 2 15 15 C 1.38627 * 120.80041 * 105.00386 * 14 13 3 16 16 C 1.38191 * 119.19087 * 180.02562 * 15 14 13 17 17 N 1.31870 * 120.82182 * 0.02562 * 16 15 14 18 18 C 1.31838 * 121.75075 * 359.97438 * 17 16 15 19 19 C 1.38464 * 120.72786 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.44477 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.47365 * 299.28989 * 1 2 3 22 22 H 1.08997 * 109.47005 * 59.29014 * 1 2 3 23 23 H 1.08999 * 109.47148 * 179.28698 * 1 2 3 24 24 H 1.08998 * 109.47853 * 239.99571 * 2 1 3 25 25 H 1.09007 * 109.47468 * 119.99414 * 2 1 3 26 26 H 1.09004 * 109.47106 * 280.36383 * 4 3 2 27 27 H 1.09003 * 109.47374 * 40.35630 * 4 3 2 28 28 H 0.97003 * 120.00475 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46803 * 173.95264 * 13 3 2 30 30 H 1.08998 * 109.46885 * 53.95365 * 13 3 2 31 31 H 1.07999 * 120.40220 * 0.03723 * 15 14 13 32 32 H 1.08003 * 119.58359 * 179.71638 * 16 15 14 33 33 H 1.08006 * 119.63577 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7966 2.0222 -1.3047 5 6 1.8480 3.5201 -1.1476 6 1 2.1063 3.9544 -0.1931 7 6 1.5651 4.3361 -2.2224 8 7 1.6094 5.6432 -2.0851 9 14 1.1190 3.5849 -3.8735 10 1 -0.3517 3.3936 -3.9491 11 1 1.5569 4.4920 -4.9646 12 1 1.7970 2.2717 -4.0193 13 6 3.4380 1.4419 0.3782 14 6 3.5932 1.0068 1.8126 15 6 4.1065 -0.2428 2.1238 16 6 4.2339 -0.6078 3.4505 17 7 3.8739 0.2158 4.4155 18 6 3.3819 1.4118 4.1592 19 6 3.2247 1.8474 2.8543 20 9 2.7194 3.0740 2.5983 21 1 -0.3634 0.5028 0.8963 22 1 -0.3633 0.5248 -0.8835 23 1 -0.3633 -1.0276 -0.0128 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5714 1.7032 -2.0020 27 1 0.8194 1.7304 -1.6893 28 1 1.4108 6.2174 -2.8413 29 1 3.8030 2.4629 0.2666 30 1 4.0130 0.7779 -0.2672 31 1 4.4033 -0.9227 1.3389 32 1 4.6288 -1.5816 3.7001 33 1 3.0975 2.0586 4.9761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449009122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:34 Heat of formation + Delta-G solvation = -26.749792 kcal Electronic energy + Delta-G solvation = -17007.585166 eV Core-core repulsion = 14175.055124 eV Total energy + Delta-G solvation = -2832.530043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.83776 -41.08738 -38.74547 -34.86040 -34.03968 -31.93483 -31.63513 -29.64181 -26.78990 -24.53286 -24.08350 -23.27833 -21.39260 -19.03810 -18.43835 -18.10904 -17.49819 -17.06377 -16.51711 -15.97270 -15.74664 -15.20469 -15.11207 -14.69485 -14.53964 -14.38157 -14.19386 -13.69032 -13.27213 -13.00467 -12.89932 -12.55795 -12.49756 -12.22316 -11.91325 -11.63687 -11.52442 -10.78547 -10.61730 -10.58644 -9.90224 -9.05497 -8.27060 -6.30274 -0.00864 0.04449 1.33763 1.35197 1.45722 2.34009 2.62909 3.04421 3.14413 3.23390 3.49502 3.62425 3.76790 3.95050 4.16485 4.30182 4.45740 4.49278 4.58305 4.66096 4.83306 4.86999 4.89142 4.92762 4.99636 5.12244 5.16375 5.33333 5.57789 5.67428 5.98191 6.31961 6.64043 6.77405 6.82537 7.32626 8.90229 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.007271 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.041639 B = 3850.211703 C = 4309.520256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.542 5.542 4 C 0.174 3.826 5 C -0.514 4.514 6 H 0.033 0.967 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.948 3.052 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.248 1.248 13 C 0.101 3.899 14 C -0.074 4.074 15 C -0.131 4.131 16 C 0.091 3.909 17 N -0.475 5.475 18 C 0.067 3.933 19 C 0.043 3.957 20 F -0.142 7.142 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.082 0.918 26 H -0.007 1.007 27 H 0.035 0.965 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.172 0.828 32 H 0.202 0.798 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -16.546 6.921 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.267 5.267 4 C 0.047 3.953 5 C -0.552 4.552 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.771 3.229 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.171 1.171 13 C -0.026 4.026 14 C -0.083 4.083 15 C -0.151 4.151 16 C -0.066 4.066 17 N -0.184 5.184 18 C -0.091 4.091 19 C 0.021 3.979 20 F -0.121 7.121 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.010 0.990 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.190 0.810 32 H 0.219 0.781 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.981 -16.345 8.029 18.641 hybrid contribution -0.077 0.915 -2.254 2.434 sum 3.904 -15.430 5.775 16.931 Atomic orbital electron populations 1.21750 0.94888 1.01977 1.01384 1.22203 0.96614 0.88410 1.00944 1.61846 1.16225 1.17112 1.31467 1.19950 0.95708 0.93190 0.86419 1.21290 1.45945 0.91029 0.96942 0.94906 1.25876 0.95124 0.95003 1.03118 1.70068 1.51426 1.04752 1.32893 0.85712 0.79425 0.79247 0.78518 1.19094 1.20828 1.17117 1.20798 0.90063 1.01079 0.90669 1.20603 0.97513 0.95036 0.95143 1.22346 0.98651 0.94440 0.99695 1.23413 0.95401 1.00066 0.87718 1.67770 1.10168 1.02838 1.37623 1.23055 0.97882 0.94446 0.93670 1.19111 1.00631 0.82341 0.95814 1.91548 1.84774 1.40683 1.95069 0.93591 0.94003 0.89792 0.94257 0.90002 0.98960 0.94699 0.92528 0.92206 0.91960 0.81019 0.78105 0.80421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.99 71.98 0.72 -3.55 16 2 C 0.05 1.42 5.55 86.30 0.48 1.90 16 3 N -0.54 -22.02 4.37 -905.36 -3.96 -25.98 16 4 C 0.17 8.25 3.65 85.56 0.31 8.56 16 5 C -0.51 -30.23 9.17 25.60 0.23 -30.00 16 6 H 0.03 2.20 7.89 -2.91 -0.02 2.18 16 7 C 0.01 0.33 5.47 84.66 0.46 0.79 16 8 N -0.95 -60.63 13.96 21.45 0.30 -60.34 16 9 Si 0.95 44.07 27.37 68.60 1.88 45.94 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.25 -10.56 6.69 99.48 0.67 -9.89 16 13 C 0.10 3.71 4.70 85.56 0.40 4.12 16 14 C -0.07 -2.26 4.50 -19.63 -0.09 -2.35 16 15 C -0.13 -2.76 8.80 22.35 0.20 -2.57 16 16 C 0.09 1.74 11.18 84.68 0.95 2.68 16 17 N -0.48 -11.75 10.36 -195.66 -2.03 -13.77 16 18 C 0.07 1.84 11.17 84.75 0.95 2.79 16 19 C 0.04 1.45 7.29 22.47 0.16 1.61 16 20 F -0.14 -6.00 16.88 44.97 0.76 -5.24 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.04 1.39 6.52 -2.39 -0.02 1.37 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.12 8.05 -2.39 -0.02 1.10 16 25 H 0.08 2.19 6.15 -2.38 -0.01 2.18 16 26 H -0.01 -0.34 7.40 -2.38 -0.02 -0.35 16 27 H 0.04 1.62 5.40 -2.39 -0.01 1.61 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.06 2.67 7.31 -2.39 -0.02 2.65 16 30 H 0.06 1.94 7.99 -2.39 -0.02 1.92 16 31 H 0.17 2.46 8.05 -2.91 -0.02 2.43 16 32 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -71.84 280.79 2.79 -69.06 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.06 Total: 6.34 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.78 Total: -16.01 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.69 Total: -100.09 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.76 Total: -5.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.94 kcal Total: -71.84 2.79 -69.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449009122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.307 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds