Wall clock time and date at job start Sun Mar 29 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 N 1.46496 * 109.47189 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00285 * 267.45880 * 4 3 2 6 6 H 1.07997 * 120.00126 * 145.51469 * 5 4 3 7 7 C 1.38811 * 119.99792 * 325.51178 * 5 4 3 8 8 N 1.31621 * 120.00166 * 337.42809 * 7 5 4 9 9 Si 1.86798 * 120.00029 * 157.42943 * 7 5 4 10 10 H 1.48508 * 109.47026 * 90.00196 * 9 7 5 11 11 H 1.48498 * 109.47142 * 209.99630 * 9 7 5 12 12 H 1.48496 * 109.47214 * 330.00376 * 9 7 5 13 13 C 1.46501 * 119.99990 * 87.46027 * 4 3 2 14 14 C 1.50702 * 109.47455 * 90.00010 * 13 4 3 15 15 C 1.38633 * 120.80133 * 104.99978 * 14 13 4 16 16 C 1.38193 * 119.19083 * 180.02562 * 15 14 13 17 17 N 1.31880 * 120.81870 * 359.97438 * 16 15 14 18 18 C 1.31836 * 121.75321 * 0.02562 * 17 16 15 19 19 C 1.38458 * 120.72791 * 0.02562 * 18 17 16 20 20 F 1.35105 * 120.44905 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.46692 * 299.99974 * 1 2 3 22 22 H 1.08995 * 109.47090 * 59.99391 * 1 2 3 23 23 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47174 * 239.99810 * 2 1 3 25 25 H 1.09007 * 109.47036 * 120.00236 * 2 1 3 26 26 H 1.09004 * 109.47191 * 60.00332 * 3 2 1 27 27 H 1.09000 * 109.47459 * 299.99861 * 3 2 1 28 28 H 0.97002 * 119.99906 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47128 * 329.99800 * 13 4 3 30 30 H 1.09001 * 109.47129 * 210.00167 * 13 4 3 31 31 H 1.07997 * 120.40307 * 0.04195 * 15 14 13 32 32 H 1.07993 * 119.58682 * 179.72512 * 16 15 14 33 33 H 1.08005 * 119.63669 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4951 1.1856 6 1 5.1268 0.9697 1.2916 7 6 3.6777 2.2240 2.2505 8 7 2.8187 3.1965 2.0302 9 14 4.2087 1.8245 3.9964 10 1 5.4079 2.6280 4.3451 11 1 3.1053 2.1489 4.9358 12 1 4.5350 0.3793 4.0961 13 6 4.2380 1.3860 -1.2666 14 6 4.4895 2.7860 -1.7643 15 6 5.7492 3.3572 -1.6706 16 6 5.9423 4.6436 -2.1370 17 7 4.9465 5.3268 -2.6669 18 6 3.7350 4.8178 -2.7732 19 6 3.4648 3.5353 -2.3268 20 9 2.2211 3.0194 -2.4381 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 2.4615 3.7060 2.7743 29 1 3.6492 0.8389 -2.0028 30 1 5.1903 0.8784 -1.1131 31 1 6.5696 2.8035 -1.2385 32 1 6.9200 5.0964 -2.0631 33 1 2.9444 5.4080 -3.2125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449020703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:49 Heat of formation + Delta-G solvation = 0.856672 kcal Electronic energy + Delta-G solvation = -17336.367694 eV Core-core repulsion = 14505.034758 eV Total energy + Delta-G solvation = -2831.332937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.34142 -39.38106 -36.27910 -33.05217 -32.30000 -30.51923 -30.12843 -26.29594 -25.60810 -22.93969 -22.70923 -21.29676 -19.84851 -17.01602 -16.90443 -16.37809 -15.87008 -15.40201 -14.70480 -14.08812 -13.81298 -13.64071 -13.25878 -13.19743 -12.87211 -12.80055 -12.19739 -11.83678 -11.37736 -11.30798 -10.94766 -10.84479 -10.62389 -10.41425 -10.06963 -9.95478 -9.52369 -9.10572 -8.91270 -8.56088 -8.34195 -6.73712 -5.88998 -3.42292 1.53237 1.73679 3.29786 3.38079 3.40855 4.17505 4.41307 4.69282 4.95871 5.19068 5.24618 5.38069 5.49376 5.56636 5.86716 5.94056 6.00558 6.03920 6.22491 6.34746 6.44804 6.49286 6.58127 6.63609 6.83848 6.88107 6.95681 7.23310 7.29414 7.68733 7.79026 8.33220 8.39501 9.07102 9.69007 10.25735 11.10327 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.010589 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.706653 B = 2643.494311 C = 3525.768079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.128 3.872 4 N -0.569 5.569 5 C -0.262 4.262 6 H 0.064 0.936 7 C 0.014 3.986 8 N -0.878 5.878 9 Si 0.899 3.101 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.173 3.827 14 C -0.066 4.066 15 C -0.138 4.138 16 C 0.078 3.922 17 N -0.479 5.479 18 C 0.062 3.938 19 C 0.057 3.943 20 F -0.129 7.129 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.256 0.744 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.152 0.848 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -1.677 -7.019 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.003 3.997 4 N -0.286 5.286 5 C -0.392 4.392 6 H 0.082 0.918 7 C -0.188 4.188 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.046 3.954 14 C -0.078 4.078 15 C -0.159 4.159 16 C -0.079 4.079 17 N -0.189 5.189 18 C -0.096 4.096 19 C 0.034 3.966 20 F -0.108 7.108 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.201 -0.763 -7.171 7.311 hybrid contribution -0.170 -0.873 1.403 1.662 sum 1.031 -1.636 -5.768 6.083 Atomic orbital electron populations 1.21682 0.97447 0.99925 1.01169 1.22040 0.93771 1.01486 1.00491 1.21341 0.82577 0.92650 1.03139 1.44127 1.01391 1.83404 0.99713 1.19107 1.06935 1.24791 0.88350 0.91787 1.25179 0.99511 0.94763 0.99330 1.70011 1.32875 1.18349 1.30683 0.86376 0.77885 0.78483 0.84518 1.21185 1.21393 1.20174 1.20127 0.97360 0.88434 0.89492 1.21802 0.91850 1.02088 0.92065 1.21878 0.97223 0.96503 1.00299 1.22600 0.97791 0.91798 0.95716 1.67579 0.99656 1.36120 1.15508 1.22609 0.95291 0.91801 0.99922 1.18596 0.80799 0.94308 1.02865 1.91401 1.38814 1.86794 1.93792 0.93132 0.93535 0.94124 0.94157 0.92613 0.88635 0.93950 0.93366 0.92905 0.92006 0.84710 0.83099 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.78 6.26 -26.73 -0.17 -2.94 16 3 C 0.13 3.00 5.27 -4.05 -0.02 2.98 16 4 N -0.57 -13.68 2.43 -174.61 -0.42 -14.10 16 5 C -0.26 -6.87 9.48 -15.06 -0.14 -7.01 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.36 4.93 -17.43 -0.09 0.28 16 8 N -0.88 -24.89 11.36 55.49 0.63 -24.26 16 9 Si 0.90 21.09 29.61 -169.99 -5.03 16.05 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.17 3.53 5.61 -5.19 -0.03 3.50 16 14 C -0.07 -1.31 5.51 -104.25 -0.57 -1.88 16 15 C -0.14 -2.46 9.77 -39.45 -0.39 -2.84 16 16 C 0.08 1.31 11.18 -17.55 -0.20 1.11 16 17 N -0.48 -8.76 10.36 -13.20 -0.14 -8.90 16 18 C 0.06 1.12 11.17 -17.47 -0.20 0.93 16 19 C 0.06 1.13 7.29 -39.28 -0.29 0.84 16 20 F -0.13 -2.61 14.05 2.25 0.03 -2.58 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.10 2.56 5.36 -51.93 -0.28 2.28 16 27 H 0.04 0.98 5.04 -51.93 -0.26 0.72 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 30 H 0.06 1.18 7.91 -51.93 -0.41 0.77 16 31 H 0.14 2.12 8.05 -52.49 -0.42 1.70 16 32 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.15 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 282.99 15.07 4.26 4.26 Total: -1.00 -29.08 282.99 -6.69 -35.76 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.30 Total: 0.90 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.72 Total: -7.14 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.07 Total: -47.26 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.08 -6.69 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449020703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.619 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds