Wall clock time and date at job start Sun Mar 29 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 N 1.46496 * 109.47189 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00285 * 267.45880 * 4 3 2 6 6 H 1.07997 * 120.00126 * 145.51469 * 5 4 3 7 7 C 1.38811 * 119.99792 * 325.51178 * 5 4 3 8 8 N 1.31621 * 120.00166 * 337.42809 * 7 5 4 9 9 Si 1.86798 * 120.00029 * 157.42943 * 7 5 4 10 10 H 1.48508 * 109.47026 * 90.00196 * 9 7 5 11 11 H 1.48498 * 109.47142 * 209.99630 * 9 7 5 12 12 H 1.48496 * 109.47214 * 330.00376 * 9 7 5 13 13 C 1.46501 * 119.99990 * 87.46027 * 4 3 2 14 14 C 1.50702 * 109.47455 * 90.00010 * 13 4 3 15 15 C 1.38633 * 120.80133 * 104.99978 * 14 13 4 16 16 C 1.38193 * 119.19083 * 180.02562 * 15 14 13 17 17 N 1.31880 * 120.81870 * 359.97438 * 16 15 14 18 18 C 1.31836 * 121.75321 * 0.02562 * 17 16 15 19 19 C 1.38458 * 120.72791 * 0.02562 * 18 17 16 20 20 F 1.35105 * 120.44905 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.46692 * 299.99974 * 1 2 3 22 22 H 1.08995 * 109.47090 * 59.99391 * 1 2 3 23 23 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47174 * 239.99810 * 2 1 3 25 25 H 1.09007 * 109.47036 * 120.00236 * 2 1 3 26 26 H 1.09004 * 109.47191 * 60.00332 * 3 2 1 27 27 H 1.09000 * 109.47459 * 299.99861 * 3 2 1 28 28 H 0.97002 * 119.99906 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47128 * 329.99800 * 13 4 3 30 30 H 1.09001 * 109.47129 * 210.00167 * 13 4 3 31 31 H 1.07997 * 120.40307 * 0.04195 * 15 14 13 32 32 H 1.07993 * 119.58682 * 179.72512 * 16 15 14 33 33 H 1.08005 * 119.63669 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4951 1.1856 6 1 5.1268 0.9697 1.2916 7 6 3.6777 2.2240 2.2505 8 7 2.8187 3.1965 2.0302 9 14 4.2087 1.8245 3.9964 10 1 5.4079 2.6280 4.3451 11 1 3.1053 2.1489 4.9358 12 1 4.5350 0.3793 4.0961 13 6 4.2380 1.3860 -1.2666 14 6 4.4895 2.7860 -1.7643 15 6 5.7492 3.3572 -1.6706 16 6 5.9423 4.6436 -2.1370 17 7 4.9465 5.3268 -2.6669 18 6 3.7350 4.8178 -2.7732 19 6 3.4648 3.5353 -2.3268 20 9 2.2211 3.0194 -2.4381 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 2.4615 3.7060 2.7743 29 1 3.6492 0.8389 -2.0028 30 1 5.1903 0.8784 -1.1131 31 1 6.5696 2.8035 -1.2385 32 1 6.9200 5.0964 -2.0631 33 1 2.9444 5.4080 -3.2125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449020703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:49 Heat of formation + Delta-G solvation = -15.006397 kcal Electronic energy + Delta-G solvation = -17337.055568 eV Core-core repulsion = 14505.034758 eV Total energy + Delta-G solvation = -2832.020811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.87835 -40.81677 -38.03914 -34.59412 -34.12037 -32.16248 -31.61561 -27.94100 -27.40489 -24.46381 -24.29958 -22.85346 -21.57392 -18.78787 -18.41746 -17.99435 -17.36208 -16.98905 -16.50433 -15.79104 -15.55005 -15.00869 -14.94401 -14.73471 -14.46565 -14.25332 -13.65411 -13.49831 -13.11584 -12.90275 -12.72218 -12.57575 -12.24245 -12.14680 -11.83255 -11.68848 -11.28203 -10.57629 -10.50844 -10.41225 -9.79901 -8.65908 -7.86167 -5.43770 0.10753 0.26425 1.43611 1.47662 1.56131 2.48174 2.76385 3.22437 3.26670 3.60547 3.73897 3.86152 3.92520 4.11462 4.34104 4.48487 4.55822 4.62886 4.71481 4.86398 4.92656 5.00501 5.02924 5.11893 5.28796 5.35162 5.36783 5.55236 5.66430 5.80125 5.92103 6.42147 6.92003 7.11998 7.80237 8.32843 9.10401 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.010589 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.706653 B = 2643.494311 C = 3525.768079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.130 3.870 4 N -0.584 5.584 5 C -0.264 4.264 6 H 0.066 0.934 7 C -0.035 4.035 8 N -0.913 5.913 9 Si 0.955 3.045 10 H -0.283 1.283 11 H -0.295 1.295 12 H -0.270 1.270 13 C 0.173 3.827 14 C -0.084 4.084 15 C -0.141 4.141 16 C 0.082 3.918 17 N -0.487 5.487 18 C 0.060 3.940 19 C 0.034 3.966 20 F -0.137 7.137 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.249 0.751 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.190 0.810 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -1.985 -7.636 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.005 3.995 4 N -0.303 5.303 5 C -0.394 4.394 6 H 0.083 0.917 7 C -0.232 4.232 8 N -0.556 5.556 9 Si 0.783 3.217 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.194 1.194 13 C 0.047 3.953 14 C -0.096 4.096 15 C -0.162 4.162 16 C -0.074 4.074 17 N -0.197 5.197 18 C -0.097 4.097 19 C 0.012 3.988 20 F -0.116 7.116 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.207 0.793 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.178 -1.084 -7.813 8.184 hybrid contribution -0.394 -0.762 1.452 1.686 sum 1.784 -1.846 -6.362 6.860 Atomic orbital electron populations 1.21627 0.95131 1.01669 1.01159 1.21904 0.95814 0.99077 1.00117 1.21223 0.82770 0.94248 1.01269 1.44207 1.01634 1.84029 1.00449 1.19336 1.06691 1.23860 0.89543 0.91659 1.25796 1.00151 0.94945 1.02334 1.70155 1.34781 1.19766 1.30939 0.85482 0.77082 0.78409 0.80695 1.20995 1.22186 1.19448 1.20157 0.97681 0.89197 0.88246 1.21861 0.93037 1.01630 0.93109 1.22197 0.97018 0.97123 0.99820 1.23233 0.98970 0.91342 0.93876 1.67688 0.99900 1.36352 1.15739 1.22987 0.96054 0.91390 0.99301 1.18875 0.80666 0.95252 1.04047 1.91370 1.39258 1.86974 1.93966 0.94049 0.92673 0.91461 0.93022 0.94295 0.92063 0.94178 0.94130 0.92007 0.90721 0.82660 0.79272 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.83 16 2 C -0.13 -5.14 6.26 30.59 0.19 -4.94 16 3 C 0.13 6.16 5.27 86.38 0.46 6.61 16 4 N -0.58 -28.02 2.43 -706.35 -1.72 -29.74 16 5 C -0.26 -13.79 9.48 84.03 0.80 -12.99 16 6 H 0.07 3.32 7.92 -2.91 -0.02 3.30 16 7 C -0.03 -1.86 4.93 84.86 0.42 -1.45 16 8 N -0.91 -52.83 11.36 21.65 0.25 -52.58 16 9 Si 0.96 43.66 29.61 68.60 2.03 45.69 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 C 0.17 6.92 5.61 85.63 0.48 7.40 16 14 C -0.08 -3.28 5.51 -19.62 -0.11 -3.39 16 15 C -0.14 -4.72 9.77 22.35 0.22 -4.50 16 16 C 0.08 2.54 11.18 84.67 0.95 3.48 16 17 N -0.49 -16.74 10.36 -195.67 -2.03 -18.77 16 18 C 0.06 2.11 11.17 84.74 0.95 3.06 16 19 C 0.03 1.32 7.29 22.47 0.16 1.48 16 20 F -0.14 -5.52 14.05 44.97 0.63 -4.89 16 21 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 3.37 5.36 -2.38 -0.01 3.36 16 27 H 0.04 1.88 5.04 -2.39 -0.01 1.86 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 30 H 0.07 2.73 7.91 -2.39 -0.02 2.72 16 31 H 0.16 4.47 8.05 -2.91 -0.02 4.44 16 32 H 0.19 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.18 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -61.91 282.99 5.48 -56.43 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.10 Total: 12.93 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.22 Total: -9.07 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.50 Total: -101.09 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.63 Total: -4.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.91 5.48 -56.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449020703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.424 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds