Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47350 * 2 1 4 4 C 1.50699 * 109.47012 * 239.99084 * 2 1 3 5 5 H 1.07999 * 119.99946 * 354.55040 * 4 2 1 6 6 C 1.37880 * 119.99750 * 174.53886 * 4 2 1 7 7 N 1.31518 * 119.99638 * 176.50651 * 6 4 2 8 8 Si 1.86795 * 120.00287 * 356.51072 * 6 4 2 9 9 H 1.48495 * 109.47404 * 90.52366 * 8 6 4 10 10 H 1.48504 * 109.47063 * 210.52832 * 8 6 4 11 11 H 1.48500 * 109.46888 * 330.52401 * 8 6 4 12 12 N 1.46901 * 109.46846 * 119.99954 * 2 1 3 13 13 C 1.46898 * 111.00420 * 58.94902 * 12 2 1 14 14 C 1.46900 * 110.99787 * 294.99676 * 12 2 1 15 15 C 1.50701 * 109.47233 * 193.33190 * 14 12 2 16 16 C 1.38632 * 120.80175 * 255.43516 * 15 14 12 17 17 C 1.38196 * 119.18935 * 179.97438 * 16 15 14 18 18 N 1.31878 * 120.82309 * 0.02562 * 17 16 15 19 19 C 1.31831 * 121.75053 * 359.97438 * 18 17 16 20 20 C 1.38470 * 120.72563 * 359.73277 * 19 18 17 21 21 F 1.35108 * 120.44615 * 180.26847 * 20 19 18 22 22 H 1.08998 * 109.46645 * 54.50595 * 1 2 3 23 23 H 1.08993 * 109.46892 * 294.51176 * 1 2 3 24 24 H 1.08993 * 109.47244 * 174.50838 * 1 2 3 25 25 H 0.97005 * 119.99608 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46940 * 53.69364 * 13 12 2 27 27 H 1.08994 * 109.47655 * 173.69532 * 13 12 2 28 28 H 1.09000 * 109.47507 * 293.70008 * 13 12 2 29 29 H 1.08991 * 109.47371 * 313.33505 * 14 12 2 30 30 H 1.09001 * 109.47087 * 73.33612 * 14 12 2 31 31 H 1.07995 * 120.40700 * 359.95691 * 16 15 14 32 32 H 1.08001 * 119.58862 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.64046 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 1.3345 -1.1974 -1.8955 6 6 3.3828 -0.7391 -1.5069 7 7 3.8278 -1.4169 -2.5424 8 14 4.5804 0.1848 -0.4108 9 1 5.0483 -0.7113 0.6770 10 1 5.7438 0.6340 -1.2170 11 1 3.9011 1.3663 0.1790 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6487 0.0392 2.4180 15 6 2.4293 -0.5035 3.5872 16 6 1.8244 -1.3277 4.5236 17 6 2.5719 -1.8071 5.5824 18 7 3.8455 -1.4894 5.7090 19 6 4.4556 -0.7087 4.8394 20 6 3.7733 -0.1952 3.7493 21 9 4.4055 0.6000 2.8586 22 1 -0.3632 0.5967 -0.8367 23 1 -0.3633 0.4263 0.9350 24 1 -0.3633 -1.0229 -0.0983 25 1 4.7780 -1.4372 -2.7368 26 1 1.7802 -2.5827 0.3145 27 1 1.9936 -2.5990 2.0815 28 1 0.4461 -2.0731 1.3768 29 1 1.8755 1.0975 2.2896 30 1 0.5819 -0.0836 2.6051 31 1 0.7816 -1.5916 4.4269 32 1 2.1070 -2.4493 6.3159 33 1 5.4999 -0.4702 4.9764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449021453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = 0.459978 kcal Electronic energy + Delta-G solvation = -17478.665924 eV Core-core repulsion = 14647.315786 eV Total energy + Delta-G solvation = -2831.350139 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.63539 -39.99055 -37.47353 -33.42534 -31.97791 -30.77174 -29.50629 -27.12231 -25.54861 -24.06030 -23.40197 -21.58709 -19.20116 -17.31889 -17.11173 -16.84404 -16.21736 -15.71643 -14.87791 -14.34447 -14.16224 -13.83948 -13.64188 -13.27930 -13.19633 -12.90420 -12.43822 -12.02686 -11.85837 -11.47555 -11.11291 -11.03108 -10.66567 -10.43042 -9.97162 -9.62244 -9.58847 -9.54394 -9.07941 -8.80333 -8.52303 -7.36797 -6.04266 -4.11659 1.02668 1.16561 3.54168 3.59233 3.68154 3.72109 4.21372 4.49476 4.60307 4.63809 4.78560 4.92729 5.03204 5.43526 5.46971 5.60527 5.84111 5.87610 5.96990 6.08494 6.14734 6.20904 6.25664 6.28527 6.46426 6.71563 6.75070 6.94114 7.16810 7.60559 7.84801 7.94431 8.13702 8.54216 8.95341 9.60274 11.04713 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.010055 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.215189 B = 2783.959808 C = 3343.816494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.513 4.513 5 H 0.072 0.928 6 C 0.083 3.917 7 N -0.897 5.897 8 Si 0.917 3.083 9 H -0.273 1.273 10 H -0.312 1.312 11 H -0.270 1.270 12 N -0.529 5.529 13 C 0.038 3.962 14 C 0.081 3.919 15 C -0.057 4.057 16 C -0.141 4.141 17 C 0.079 3.921 18 N -0.466 5.466 19 C 0.065 3.935 20 C 0.071 3.929 21 F -0.119 7.119 22 H 0.051 0.949 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.014 0.986 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 1.543 14.488 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.064 0.936 4 C -0.551 4.551 5 H 0.090 0.910 6 C -0.121 4.121 7 N -0.534 5.534 8 Si 0.748 3.252 9 H -0.199 1.199 10 H -0.241 1.241 11 H -0.195 1.195 12 N -0.255 5.255 13 C -0.110 4.110 14 C -0.047 4.047 15 C -0.067 4.067 16 C -0.162 4.162 17 C -0.077 4.077 18 N -0.175 5.175 19 C -0.094 4.094 20 C 0.049 3.951 21 F -0.097 7.097 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.478 1.181 15.012 15.261 hybrid contribution -0.513 0.819 -0.354 1.029 sum -2.991 2.000 14.658 15.093 Atomic orbital electron populations 1.22294 0.99834 1.00927 0.99208 1.19924 0.89843 0.95486 0.88211 0.93596 1.20839 0.93142 1.35939 1.05151 0.91010 1.25046 0.98688 0.94051 0.94322 1.69966 1.14736 1.40640 1.28069 0.86210 0.78819 0.80859 0.79357 1.19872 1.24057 1.19537 1.62803 1.59647 1.02467 1.00544 1.22154 0.95813 0.90553 1.02524 1.21064 0.95747 0.98830 0.89050 1.20659 0.93011 0.96211 0.96787 1.22011 1.01805 0.97595 0.94771 1.22705 0.89787 0.98298 0.96959 1.67654 1.10960 1.11665 1.27201 1.22837 1.00832 0.95398 0.90284 1.18714 0.91527 0.94932 0.89961 1.91553 1.81510 1.70559 1.66121 0.92983 0.95269 0.93184 0.92723 0.89475 0.94172 0.96770 0.90145 0.93561 0.84247 0.82365 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.40 37.16 0.31 -2.84 16 2 C 0.17 3.87 1.69 -68.86 -0.12 3.76 16 3 H 0.05 1.10 6.54 -51.93 -0.34 0.76 16 4 C -0.51 -14.02 7.71 -34.44 -0.27 -14.29 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 8 Si 0.92 23.87 25.06 -169.99 -4.26 19.62 16 9 H -0.27 -7.19 7.00 56.52 0.40 -6.80 16 10 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 11 H -0.27 -6.82 6.35 56.52 0.36 -6.46 16 12 N -0.53 -11.12 2.99 -237.73 -0.71 -11.83 16 13 C 0.04 0.74 8.57 60.06 0.51 1.25 16 14 C 0.08 1.40 4.22 -4.98 -0.02 1.38 16 15 C -0.06 -0.92 4.60 -104.25 -0.48 -1.40 16 16 C -0.14 -1.82 9.35 -39.45 -0.37 -2.19 16 17 C 0.08 0.97 11.18 -17.55 -0.20 0.78 16 18 N -0.47 -6.70 10.36 -13.20 -0.14 -6.83 16 19 C 0.06 0.96 11.17 -17.47 -0.20 0.77 16 20 C 0.07 1.20 7.29 -39.27 -0.29 0.92 16 21 F -0.12 -2.32 15.31 2.25 0.03 -2.29 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.03 0.48 6.58 -51.93 -0.34 0.14 16 24 H 0.05 0.96 6.84 -51.93 -0.36 0.61 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.09 1.97 6.91 -51.93 -0.36 1.61 16 27 H 0.04 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.01 0.25 6.72 -51.93 -0.35 -0.10 16 29 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 30 H 0.05 0.71 6.80 -51.93 -0.35 0.35 16 31 H 0.14 1.44 8.05 -52.49 -0.42 1.02 16 32 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -31.05 271.85 -5.58 -36.63 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.17 Total: -3.17 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.20 Total: -9.56 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.07 Total: -45.33 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.26 Total: 19.62 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.05 -5.58 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds