Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47350 * 2 1 4 4 C 1.50699 * 109.47012 * 239.99084 * 2 1 3 5 5 H 1.07999 * 119.99946 * 354.55040 * 4 2 1 6 6 C 1.37880 * 119.99750 * 174.53886 * 4 2 1 7 7 N 1.31518 * 119.99638 * 176.50651 * 6 4 2 8 8 Si 1.86795 * 120.00287 * 356.51072 * 6 4 2 9 9 H 1.48495 * 109.47404 * 90.52366 * 8 6 4 10 10 H 1.48504 * 109.47063 * 210.52832 * 8 6 4 11 11 H 1.48500 * 109.46888 * 330.52401 * 8 6 4 12 12 N 1.46901 * 109.46846 * 119.99954 * 2 1 3 13 13 C 1.46898 * 111.00420 * 58.94902 * 12 2 1 14 14 C 1.46900 * 110.99787 * 294.99676 * 12 2 1 15 15 C 1.50701 * 109.47233 * 193.33190 * 14 12 2 16 16 C 1.38632 * 120.80175 * 255.43516 * 15 14 12 17 17 C 1.38196 * 119.18935 * 179.97438 * 16 15 14 18 18 N 1.31878 * 120.82309 * 0.02562 * 17 16 15 19 19 C 1.31831 * 121.75053 * 359.97438 * 18 17 16 20 20 C 1.38470 * 120.72563 * 359.73277 * 19 18 17 21 21 F 1.35108 * 120.44615 * 180.26847 * 20 19 18 22 22 H 1.08998 * 109.46645 * 54.50595 * 1 2 3 23 23 H 1.08993 * 109.46892 * 294.51176 * 1 2 3 24 24 H 1.08993 * 109.47244 * 174.50838 * 1 2 3 25 25 H 0.97005 * 119.99608 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46940 * 53.69364 * 13 12 2 27 27 H 1.08994 * 109.47655 * 173.69532 * 13 12 2 28 28 H 1.09000 * 109.47507 * 293.70008 * 13 12 2 29 29 H 1.08991 * 109.47371 * 313.33505 * 14 12 2 30 30 H 1.09001 * 109.47087 * 73.33612 * 14 12 2 31 31 H 1.07995 * 120.40700 * 359.95691 * 16 15 14 32 32 H 1.08001 * 119.58862 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.64046 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 1.3345 -1.1974 -1.8955 6 6 3.3828 -0.7391 -1.5069 7 7 3.8278 -1.4169 -2.5424 8 14 4.5804 0.1848 -0.4108 9 1 5.0483 -0.7113 0.6770 10 1 5.7438 0.6340 -1.2170 11 1 3.9011 1.3663 0.1790 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6487 0.0392 2.4180 15 6 2.4293 -0.5035 3.5872 16 6 1.8244 -1.3277 4.5236 17 6 2.5719 -1.8071 5.5824 18 7 3.8455 -1.4894 5.7090 19 6 4.4556 -0.7087 4.8394 20 6 3.7733 -0.1952 3.7493 21 9 4.4055 0.6000 2.8586 22 1 -0.3632 0.5967 -0.8367 23 1 -0.3633 0.4263 0.9350 24 1 -0.3633 -1.0229 -0.0983 25 1 4.7780 -1.4372 -2.7368 26 1 1.7802 -2.5827 0.3145 27 1 1.9936 -2.5990 2.0815 28 1 0.4461 -2.0731 1.3768 29 1 1.8755 1.0975 2.2896 30 1 0.5819 -0.0836 2.6051 31 1 0.7816 -1.5916 4.4269 32 1 2.1070 -2.4493 6.3159 33 1 5.4999 -0.4702 4.9764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449021453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = -20.539141 kcal Electronic energy + Delta-G solvation = -17479.576514 eV Core-core repulsion = 14647.315786 eV Total energy + Delta-G solvation = -2832.260729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.95009 -41.09371 -39.05491 -35.01280 -33.80448 -31.83762 -31.12783 -28.52951 -27.43505 -25.58547 -24.48772 -22.92241 -20.95300 -18.93218 -18.50281 -18.24158 -17.44758 -17.07367 -16.39753 -16.29605 -15.41568 -15.14062 -15.09442 -14.77835 -14.64272 -14.38207 -14.08784 -13.42050 -13.17773 -13.14695 -12.76176 -12.70939 -12.38603 -12.19110 -11.85221 -11.63420 -11.18755 -10.75670 -10.63368 -10.60294 -9.93606 -8.93769 -8.27579 -6.35527 -0.03537 0.04317 1.41844 1.49970 1.60234 2.44619 2.60422 2.99837 3.11791 3.45843 3.53370 3.62321 3.78934 3.94478 4.35024 4.45456 4.46174 4.51829 4.65306 4.70106 4.73865 4.80179 4.87664 4.91031 5.07404 5.17558 5.34403 5.45621 5.63532 5.65323 6.07690 6.41673 6.58217 6.79986 6.80753 7.38991 8.84922 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.010055 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.215189 B = 2783.959808 C = 3343.816494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.173 3.827 3 H 0.036 0.964 4 C -0.503 4.503 5 H 0.038 0.962 6 C 0.034 3.966 7 N -0.945 5.945 8 Si 0.972 3.028 9 H -0.279 1.279 10 H -0.319 1.319 11 H -0.259 1.259 12 N -0.552 5.552 13 C 0.048 3.952 14 C 0.085 3.915 15 C -0.073 4.073 16 C -0.130 4.130 17 C 0.089 3.911 18 N -0.479 5.479 19 C 0.063 3.937 20 C 0.036 3.964 21 F -0.143 7.143 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.262 0.738 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.173 0.827 32 H 0.200 0.800 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 1.496 17.491 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.067 3.933 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.056 0.944 6 C -0.165 4.165 7 N -0.585 5.585 8 Si 0.802 3.198 9 H -0.205 1.205 10 H -0.248 1.248 11 H -0.184 1.184 12 N -0.277 5.277 13 C -0.100 4.100 14 C -0.042 4.042 15 C -0.082 4.082 16 C -0.150 4.150 17 C -0.068 4.068 18 N -0.187 5.187 19 C -0.094 4.094 20 C 0.014 3.986 21 F -0.121 7.121 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.216 0.784 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.063 1.146 18.037 18.524 hybrid contribution -0.133 0.770 -1.181 1.415 sum -4.196 1.916 16.856 17.476 Atomic orbital electron populations 1.22162 0.96953 1.01191 1.01055 1.19712 0.92182 0.94139 0.87276 0.94610 1.21118 0.92220 1.34407 1.06409 0.94364 1.25691 1.00406 0.95063 0.95325 1.70077 1.14910 1.43237 1.30261 0.85339 0.76932 0.80076 0.77441 1.20518 1.24842 1.18384 1.62369 1.60718 1.03206 1.01456 1.22026 0.97498 0.89528 1.00978 1.21042 0.97619 0.97905 0.87644 1.20696 0.92663 0.97499 0.97347 1.22353 1.03268 0.95775 0.93574 1.23416 0.88949 0.97303 0.97124 1.67756 1.12198 1.11702 1.27071 1.23048 1.01575 0.95081 0.89718 1.19096 0.92478 0.96232 0.90758 1.91477 1.82071 1.71480 1.67100 0.93103 0.91841 0.93316 0.92892 0.93498 0.92643 0.94165 0.90968 0.90562 0.80925 0.78356 0.80628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 8.40 71.98 0.60 -4.97 16 2 C 0.17 7.68 1.69 44.17 0.07 7.76 16 3 H 0.04 1.68 6.54 -2.39 -0.02 1.66 16 4 C -0.50 -28.02 7.71 25.60 0.20 -27.82 16 5 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 6 C 0.03 2.03 5.47 84.65 0.46 2.49 16 7 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 8 Si 0.97 50.52 25.06 68.60 1.72 52.24 16 9 H -0.28 -14.65 7.00 99.48 0.70 -13.95 16 10 H -0.32 -16.75 7.11 99.48 0.71 -16.04 16 11 H -0.26 -12.82 6.35 99.48 0.63 -12.18 16 12 N -0.55 -22.18 2.99 -906.06 -2.71 -24.89 16 13 C 0.05 1.77 8.57 127.69 1.09 2.86 16 14 C 0.09 2.67 4.22 85.56 0.36 3.03 16 15 C -0.07 -2.11 4.60 -19.63 -0.09 -2.20 16 16 C -0.13 -2.71 9.35 22.35 0.21 -2.50 16 17 C 0.09 1.76 11.18 84.68 0.95 2.71 16 18 N -0.48 -12.20 10.36 -195.66 -2.03 -14.23 16 19 C 0.06 1.76 11.17 84.75 0.95 2.70 16 20 C 0.04 1.18 7.29 22.47 0.16 1.34 16 21 F -0.14 -5.48 15.31 44.97 0.69 -4.80 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.85 6.58 -2.39 -0.02 1.83 16 24 H 0.05 1.75 6.84 -2.39 -0.02 1.74 16 25 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 26 H 0.05 2.11 6.91 -2.38 -0.02 2.09 16 27 H 0.05 1.86 7.13 -2.39 -0.02 1.85 16 28 H 0.04 1.26 6.72 -2.39 -0.02 1.25 16 29 H 0.07 2.38 7.92 -2.39 -0.02 2.36 16 30 H 0.08 1.93 6.80 -2.39 -0.02 1.91 16 31 H 0.17 2.45 8.05 -2.91 -0.02 2.42 16 32 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -69.24 271.85 3.96 -65.28 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 1.02 Total: 0.48 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 4.97 Total: -14.59 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.44 Total: -98.62 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.69 Total: -4.80 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.72 Total: 52.24 kcal Total: -69.24 3.96 -65.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.737 kcal (2) G-P(sol) polarization free energy of solvation -69.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds