Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 C 1.50698 * 109.46865 * 119.99587 * 2 1 3 5 5 H 1.08006 * 119.99639 * 120.00222 * 4 2 1 6 6 C 1.37873 * 120.00437 * 300.00005 * 4 2 1 7 7 N 1.31515 * 119.99700 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46936 * 59.99930 * 8 6 4 10 10 H 1.48503 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.46974 * 299.99807 * 8 6 4 12 12 N 1.46899 * 109.46972 * 239.99658 * 2 1 3 13 13 C 1.46892 * 111.00218 * 306.04706 * 12 2 1 14 14 C 1.46900 * 110.99930 * 70.00407 * 12 2 1 15 15 C 1.50698 * 109.47276 * 169.99882 * 14 12 2 16 16 C 1.38631 * 120.80218 * 259.97848 * 15 14 12 17 17 C 1.38185 * 119.19423 * 180.02562 * 16 15 14 18 18 N 1.31881 * 120.82233 * 359.97438 * 17 16 15 19 19 C 1.31839 * 121.74858 * 359.70548 * 18 17 16 20 20 C 1.38471 * 120.72251 * 0.58579 * 19 18 17 21 21 F 1.35104 * 120.44160 * 179.69925 * 20 19 18 22 22 H 1.09003 * 109.47397 * 59.99798 * 1 2 3 23 23 H 1.08997 * 109.47835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47093 * 300.00477 * 1 2 3 25 25 H 0.97003 * 119.99345 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47522 * 183.95333 * 13 12 2 27 27 H 1.09003 * 109.47207 * 303.95529 * 13 12 2 28 28 H 1.09002 * 109.47305 * 63.95238 * 13 12 2 29 29 H 1.09002 * 109.47274 * 49.99537 * 14 12 2 30 30 H 1.08999 * 109.47157 * 289.99550 * 14 12 2 31 31 H 1.07999 * 120.40124 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.59230 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.63602 * 180.30991 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0077 10 1 1.8268 -0.4198 5.2205 11 1 1.8279 -2.5196 4.0083 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4774 -0.5164 -3.5794 16 6 3.6797 0.0103 -4.0253 17 6 4.3154 -0.5783 -5.1018 18 7 3.7925 -1.6289 -5.7036 19 6 2.6545 -2.1617 -5.3048 20 6 1.9570 -1.6229 -4.2368 21 9 0.7882 -2.1699 -3.8367 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7087 1.1614 3.4844 26 1 1.8663 -2.5521 -2.1647 27 1 1.6465 -2.5988 -0.3990 28 1 0.3555 -1.9521 -1.4398 29 1 2.1025 1.1188 -2.2604 30 1 0.6814 0.1052 -2.6088 31 1 4.1138 0.8706 -3.5377 32 1 5.2523 -0.1731 -5.4548 33 1 2.2597 -3.0252 -5.8195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449021457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = 1.194829 kcal Electronic energy + Delta-G solvation = -17075.389988 eV Core-core repulsion = 14244.071715 eV Total energy + Delta-G solvation = -2831.318273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.90573 -39.98515 -37.29791 -33.56081 -32.08975 -30.78115 -28.69389 -27.05476 -25.25828 -24.35143 -23.33750 -21.70861 -19.29894 -17.40769 -17.15367 -16.53986 -16.22290 -15.84732 -14.94331 -14.16700 -14.11431 -13.90632 -13.61896 -13.37131 -13.23724 -12.67274 -12.19634 -12.09601 -11.52716 -11.04845 -11.02970 -10.78651 -10.67827 -10.56648 -10.06848 -10.00279 -9.58792 -9.48463 -8.95046 -8.88428 -8.41469 -7.26499 -6.04135 -4.08004 0.99163 1.16391 3.31336 3.35432 3.38630 3.67502 4.13112 4.39087 4.46297 4.72261 4.75502 4.96527 5.14272 5.28300 5.49507 5.60852 5.83799 5.89211 6.03376 6.16132 6.25813 6.41819 6.61846 6.69029 6.78967 6.86289 7.05596 7.37187 7.65691 7.78443 7.82751 8.04076 8.30408 8.51037 8.97159 9.56986 11.02945 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039726 B = 0.006110 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.664491 B = 4581.255330 C = 4698.891613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.527 5.527 13 C 0.029 3.971 14 C 0.085 3.915 15 C -0.049 4.049 16 C -0.130 4.130 17 C 0.083 3.917 18 N -0.468 5.468 19 C 0.067 3.933 20 C 0.051 3.949 21 F -0.126 7.126 22 H 0.006 0.994 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.261 0.739 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.023 0.977 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -1.851 -12.757 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.251 5.251 13 C -0.119 4.119 14 C -0.043 4.043 15 C -0.059 4.059 16 C -0.150 4.150 17 C -0.074 4.074 18 N -0.177 5.177 19 C -0.091 4.091 20 C 0.029 3.971 21 F -0.105 7.105 22 H 0.025 0.975 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.041 0.959 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.224 -2.163 -13.237 13.795 hybrid contribution -1.300 -0.070 1.636 2.091 sum 1.923 -2.233 -11.601 11.969 Atomic orbital electron populations 1.22414 1.00654 0.99604 1.00517 1.19350 0.89917 0.94471 0.85689 0.94232 1.21038 1.30702 1.12560 0.89514 0.91996 1.24920 0.95190 0.95139 0.98995 1.69873 1.36939 1.23036 1.23578 0.86559 0.79227 0.79612 0.81999 1.20212 1.21357 1.20355 1.62477 1.58872 1.02472 1.01245 1.22464 0.96581 0.91568 1.01307 1.21028 0.96900 0.97817 0.88557 1.20655 0.95451 0.93673 0.96099 1.22045 0.94135 1.01624 0.97190 1.22775 0.99605 0.92106 0.92898 1.67666 1.10354 1.10517 1.29163 1.22787 0.91842 1.00160 0.94294 1.18718 0.85051 0.95699 0.97614 1.91523 1.44795 1.84410 1.89776 0.97498 0.94853 0.89212 0.92904 0.93789 0.90906 0.95856 0.89647 0.93809 0.83706 0.82206 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.22 37.16 0.31 -3.84 16 2 C 0.21 5.23 2.31 -68.87 -0.16 5.07 16 3 H 0.04 1.06 7.93 -51.93 -0.41 0.65 16 4 C -0.50 -13.55 7.91 -34.44 -0.27 -13.82 16 5 H 0.06 1.70 7.12 -52.48 -0.37 1.32 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.24 4.69 -237.74 -1.12 -12.36 16 13 C 0.03 0.59 7.27 60.06 0.44 1.03 16 14 C 0.09 1.52 4.61 -4.98 -0.02 1.49 16 15 C -0.05 -0.77 5.18 -104.26 -0.54 -1.31 16 16 C -0.13 -1.69 9.78 -39.46 -0.39 -2.07 16 17 C 0.08 0.99 11.18 -17.55 -0.20 0.80 16 18 N -0.47 -6.31 10.36 -13.19 -0.14 -6.45 16 19 C 0.07 0.89 11.17 -17.46 -0.20 0.70 16 20 C 0.05 0.77 5.95 -39.28 -0.23 0.53 16 21 F -0.13 -2.01 14.06 2.25 0.03 -1.98 16 22 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 23 H 0.03 0.78 6.42 -51.93 -0.33 0.45 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.04 0.82 5.07 -51.93 -0.26 0.56 16 27 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 28 H 0.02 0.47 6.20 -51.93 -0.32 0.15 16 29 H 0.09 1.44 7.83 -51.93 -0.41 1.04 16 30 H 0.04 0.80 6.93 -51.93 -0.36 0.44 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -28.91 269.89 -6.80 -35.72 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.90 Total: -0.77 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.36 Total: -9.92 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.63 Total: -43.34 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.91 -6.80 -35.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.914 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds