Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 C 1.50698 * 109.46865 * 119.99587 * 2 1 3 5 5 H 1.08006 * 119.99639 * 120.00222 * 4 2 1 6 6 C 1.37873 * 120.00437 * 300.00005 * 4 2 1 7 7 N 1.31515 * 119.99700 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46936 * 59.99930 * 8 6 4 10 10 H 1.48503 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.46974 * 299.99807 * 8 6 4 12 12 N 1.46899 * 109.46972 * 239.99658 * 2 1 3 13 13 C 1.46892 * 111.00218 * 306.04706 * 12 2 1 14 14 C 1.46900 * 110.99930 * 70.00407 * 12 2 1 15 15 C 1.50698 * 109.47276 * 169.99882 * 14 12 2 16 16 C 1.38631 * 120.80218 * 259.97848 * 15 14 12 17 17 C 1.38185 * 119.19423 * 180.02562 * 16 15 14 18 18 N 1.31881 * 120.82233 * 359.97438 * 17 16 15 19 19 C 1.31839 * 121.74858 * 359.70548 * 18 17 16 20 20 C 1.38471 * 120.72251 * 0.58579 * 19 18 17 21 21 F 1.35104 * 120.44160 * 179.69925 * 20 19 18 22 22 H 1.09003 * 109.47397 * 59.99798 * 1 2 3 23 23 H 1.08997 * 109.47835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47093 * 300.00477 * 1 2 3 25 25 H 0.97003 * 119.99345 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47522 * 183.95333 * 13 12 2 27 27 H 1.09003 * 109.47207 * 303.95529 * 13 12 2 28 28 H 1.09002 * 109.47305 * 63.95238 * 13 12 2 29 29 H 1.09002 * 109.47274 * 49.99537 * 14 12 2 30 30 H 1.08999 * 109.47157 * 289.99550 * 14 12 2 31 31 H 1.07999 * 120.40124 * 359.97438 * 16 15 14 32 32 H 1.08003 * 119.59230 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.63602 * 180.30991 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0077 10 1 1.8268 -0.4198 5.2205 11 1 1.8279 -2.5196 4.0083 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4774 -0.5164 -3.5794 16 6 3.6797 0.0103 -4.0253 17 6 4.3154 -0.5783 -5.1018 18 7 3.7925 -1.6289 -5.7036 19 6 2.6545 -2.1617 -5.3048 20 6 1.9570 -1.6229 -4.2368 21 9 0.7882 -2.1699 -3.8367 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7087 1.1614 3.4844 26 1 1.8663 -2.5521 -2.1647 27 1 1.6465 -2.5988 -0.3990 28 1 0.3555 -1.9521 -1.4398 29 1 2.1025 1.1188 -2.2604 30 1 0.6814 0.1052 -2.6088 31 1 4.1138 0.8706 -3.5377 32 1 5.2523 -0.1731 -5.4548 33 1 2.2597 -3.0252 -5.8195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449021457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = -17.269633 kcal Electronic energy + Delta-G solvation = -17076.190668 eV Core-core repulsion = 14244.071715 eV Total energy + Delta-G solvation = -2832.118952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.07463 -41.05782 -38.96888 -35.23003 -33.68128 -31.82099 -30.50667 -28.54670 -27.29642 -25.88755 -24.40910 -23.07183 -21.08103 -18.55875 -18.38641 -18.17449 -17.56407 -17.23553 -16.72412 -15.82324 -15.42595 -15.20501 -15.06778 -14.62700 -14.52489 -14.32555 -13.81277 -13.41917 -13.18861 -12.84140 -12.78329 -12.64593 -12.43522 -12.26559 -12.04505 -11.81199 -11.03502 -10.65363 -10.60713 -10.50095 -9.94040 -8.97864 -8.12077 -6.22899 -0.03950 0.07008 1.43255 1.44105 1.51949 2.41987 2.64254 3.06877 3.17151 3.35772 3.52823 3.64492 3.72324 3.91419 4.37130 4.44035 4.51427 4.58357 4.69854 4.75865 4.76830 4.87372 4.90375 5.07959 5.10927 5.19506 5.46341 5.65898 5.66972 5.74046 6.14052 6.38686 6.62262 6.82415 6.88162 7.45970 8.93775 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039726 B = 0.006110 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.664491 B = 4581.255330 C = 4698.891613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.015 0.985 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.040 3.960 14 C 0.089 3.911 15 C -0.069 4.069 16 C -0.129 4.129 17 C 0.093 3.907 18 N -0.478 5.478 19 C 0.073 3.927 20 C 0.033 3.967 21 F -0.137 7.137 22 H 0.024 0.976 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.262 0.738 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.163 0.837 32 H 0.198 0.802 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -2.321 -13.787 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.033 0.967 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.108 4.108 14 C -0.039 4.039 15 C -0.078 4.078 16 C -0.149 4.149 17 C -0.064 4.064 18 N -0.187 5.187 19 C -0.085 4.085 20 C 0.011 3.989 21 F -0.116 7.116 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.180 0.820 32 H 0.214 0.786 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.404 -2.640 -14.287 15.182 hybrid contribution -1.623 0.105 1.859 2.470 sum 2.781 -2.535 -12.428 12.985 Atomic orbital electron populations 1.22218 1.00335 0.99187 1.00071 1.19110 0.90013 0.93198 0.86749 0.96673 1.21295 1.30789 1.12520 0.90861 0.92784 1.25654 0.95344 0.95798 1.01712 1.69992 1.37681 1.24077 1.24153 0.85607 0.78757 0.78593 0.78637 1.19752 1.20879 1.19923 1.62344 1.58916 1.02942 1.01621 1.22354 0.96384 0.91075 1.01010 1.20979 0.97017 0.97864 0.88024 1.20557 0.96679 0.94658 0.95909 1.22290 0.93142 1.02007 0.97433 1.23359 1.00285 0.91022 0.91717 1.67779 1.10397 1.11102 1.29430 1.23137 0.91450 1.00440 0.93483 1.18912 0.85189 0.96116 0.98647 1.91489 1.45438 1.84615 1.90010 0.95736 0.95117 0.91726 0.92881 0.91974 0.92816 0.96230 0.89166 0.94548 0.81971 0.78561 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.22 71.98 0.59 -7.13 16 2 C 0.22 10.84 2.31 44.17 0.10 10.94 16 3 H 0.02 0.84 7.93 -2.39 -0.02 0.82 16 4 C -0.52 -28.31 7.91 25.60 0.20 -28.11 16 5 H 0.05 2.99 7.12 -2.91 -0.02 2.97 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.53 -22.81 4.69 -906.07 -4.25 -27.06 16 13 C 0.04 1.63 7.27 127.69 0.93 2.55 16 14 C 0.09 3.13 4.61 85.56 0.39 3.52 16 15 C -0.07 -2.04 5.18 -19.63 -0.10 -2.14 16 16 C -0.13 -3.03 9.78 22.35 0.22 -2.81 16 17 C 0.09 1.91 11.18 84.67 0.95 2.85 16 18 N -0.48 -11.47 10.36 -195.66 -2.03 -13.49 16 19 C 0.07 1.76 11.17 84.75 0.95 2.70 16 20 C 0.03 0.95 5.95 22.47 0.13 1.08 16 21 F -0.14 -4.24 14.06 44.97 0.63 -3.61 16 22 H 0.02 1.05 6.91 -2.39 -0.02 1.04 16 23 H 0.03 1.46 6.42 -2.39 -0.02 1.44 16 24 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 25 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.06 2.28 5.07 -2.39 -0.01 2.27 16 27 H 0.05 2.35 6.76 -2.39 -0.02 2.34 16 28 H 0.02 0.79 6.20 -2.39 -0.01 0.78 16 29 H 0.09 3.02 7.83 -2.39 -0.02 3.01 16 30 H 0.04 1.33 6.93 -2.39 -0.02 1.31 16 31 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -61.32 269.89 2.55 -58.77 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.12 Total: 7.16 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.81 Total: -15.34 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -6.04 Total: -92.56 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.63 Total: -3.61 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -61.32 2.55 -58.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.504 kcal (2) G-P(sol) polarization free energy of solvation -61.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds