Wall clock time and date at job start Sun Mar 29 2020 22:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47314 * 2 1 4 4 H 1.09000 * 109.46950 * 305.65827 * 3 2 1 5 5 C 1.50697 * 109.47399 * 185.65872 * 3 2 1 6 6 H 1.07998 * 119.99981 * 240.00158 * 5 3 2 7 7 C 1.37877 * 120.00049 * 59.99714 * 5 3 2 8 8 N 1.31518 * 120.00175 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99900 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47291 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47195 * 120.00306 * 9 7 5 12 12 H 1.48505 * 109.46763 * 239.99839 * 9 7 5 13 13 N 1.46895 * 109.46938 * 65.65524 * 3 2 1 14 14 C 1.46904 * 111.00164 * 205.58088 * 13 3 2 15 15 C 1.50701 * 109.47226 * 183.71572 * 14 13 3 16 16 C 1.38640 * 120.79666 * 260.27075 * 15 14 13 17 17 C 1.38190 * 119.18348 * 180.34258 * 16 15 14 18 18 N 1.31874 * 120.82424 * 359.65576 * 17 16 15 19 19 C 1.31832 * 121.75175 * 0.02562 * 18 17 16 20 20 C 1.38465 * 120.72616 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.44162 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.46847 * 295.52932 * 1 2 3 23 23 H 1.09005 * 109.46783 * 55.52215 * 1 2 3 24 24 H 1.08997 * 109.47004 * 175.52341 * 1 2 3 25 25 H 1.09006 * 109.47327 * 240.00181 * 2 1 3 26 26 H 1.08999 * 109.47579 * 120.00242 * 2 1 3 27 27 H 0.96995 * 119.99888 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00550 * 329.53603 * 13 3 2 29 29 H 1.09007 * 109.46708 * 63.71514 * 14 13 3 30 30 H 1.09002 * 109.47130 * 303.72276 * 14 13 3 31 31 H 1.07997 * 120.40951 * 0.02562 * 16 15 14 32 32 H 1.08007 * 119.58541 * 179.67803 * 17 16 15 33 33 H 1.08002 * 119.63744 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1401 6 1 4.1542 1.8864 0.6311 7 6 4.1299 0.8831 -1.2528 8 7 3.3826 0.3458 -2.1922 9 14 5.9899 0.8854 -1.4261 10 1 6.5965 1.5461 -0.2426 11 1 6.4801 -0.5132 -1.5183 12 1 6.3715 1.6257 -2.6556 13 7 1.6650 2.0944 1.2618 14 6 1.5710 3.5508 1.0943 15 6 1.2749 4.1916 2.4258 16 6 -0.0151 4.5764 2.7571 17 6 -0.2477 5.1675 3.9844 18 7 0.7379 5.3609 4.8389 19 6 1.9761 5.0028 4.5624 20 6 2.2864 4.4057 3.3523 21 9 3.5575 4.0415 3.0746 22 1 -0.3633 0.4429 0.9273 23 1 -0.3633 0.5818 -0.8472 24 1 -0.3633 -1.0245 -0.0802 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7973 -0.0497 -2.9748 28 1 0.8021 1.7155 1.6222 29 1 0.7705 3.7849 0.3924 30 1 2.5158 3.9340 0.7087 31 1 -0.8274 4.4209 2.0626 32 1 -1.2493 5.4746 4.2471 33 1 2.7573 5.1778 5.2874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449242091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:09 Heat of formation + Delta-G solvation = -17.260619 kcal Electronic energy + Delta-G solvation = -16761.171030 eV Core-core repulsion = 13929.052469 eV Total energy + Delta-G solvation = -2832.118561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.56596 -39.92434 -36.56164 -33.73765 -31.88850 -30.84150 -30.37890 -26.96940 -25.12109 -23.38596 -22.77663 -21.50428 -19.63411 -17.27448 -17.12221 -16.32766 -16.25405 -15.54033 -14.81161 -14.42003 -14.12615 -13.90997 -13.47598 -13.25704 -13.07500 -12.69642 -12.35324 -12.02727 -11.84906 -11.34111 -11.09426 -10.86992 -10.60687 -9.99200 -9.97137 -9.71263 -9.55821 -9.41447 -9.10367 -8.79745 -8.37229 -7.35747 -5.99264 -4.03131 1.03082 1.17845 3.31064 3.39197 3.45800 3.70212 4.22176 4.44373 4.49899 4.73397 4.82075 4.98744 5.28893 5.43550 5.48290 5.68466 5.90498 5.95671 6.10245 6.11233 6.21985 6.34483 6.39194 6.74184 6.78769 7.00903 7.10996 7.39251 7.72528 7.84815 7.89316 8.17578 8.33333 8.66379 9.05867 9.62221 11.06316 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.007110 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.360863 B = 3937.407676 C = 4746.519062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.102 3.898 15 C -0.062 4.062 16 C -0.143 4.143 17 C 0.078 3.922 18 N -0.467 5.467 19 C 0.062 3.938 20 C 0.075 3.925 21 F -0.116 7.116 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.259 0.741 28 H 0.318 0.682 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 7.013 8.163 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.071 4.071 16 C -0.164 4.164 17 C -0.079 4.079 18 N -0.175 5.175 19 C -0.096 4.096 20 C 0.053 3.947 21 F -0.094 7.094 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.216 7.311 8.994 13.153 hybrid contribution 0.520 -0.488 -1.580 1.734 sum -5.696 6.823 7.414 11.574 Atomic orbital electron populations 1.21884 0.99571 0.99812 0.99491 1.21774 0.91244 1.00162 1.03240 1.19199 0.95754 0.90037 0.83739 0.97867 1.21262 0.91144 1.36494 1.04295 0.91791 1.24956 0.98194 0.95575 0.95805 1.69877 1.34650 1.39606 1.09595 0.86490 0.85717 0.77640 0.77911 1.19672 1.21096 1.21223 1.60731 1.36380 1.00405 1.33442 1.20787 1.01776 0.90909 0.89288 1.20787 0.92459 0.96381 0.97510 1.22056 0.96430 0.99479 0.98421 1.22701 0.98409 0.96608 0.90154 1.67649 0.99616 1.16911 1.33367 1.22848 0.94914 0.97225 0.94588 1.18693 0.80634 0.99808 0.95567 1.91584 1.35131 1.89043 1.93688 0.94693 0.93845 0.94281 0.88063 0.93964 0.93112 0.86439 0.94758 0.89089 0.84245 0.82407 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.67 37.16 0.36 -2.46 16 2 C -0.13 -2.91 5.36 -26.73 -0.14 -3.05 16 3 C 0.22 5.34 2.02 -68.87 -0.14 5.20 16 4 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 5 C -0.49 -13.52 8.58 -34.44 -0.30 -13.82 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.66 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -14.09 6.26 -109.22 -0.68 -14.77 16 14 C 0.10 1.86 5.38 -4.97 -0.03 1.84 16 15 C -0.06 -0.97 5.47 -104.26 -0.57 -1.54 16 16 C -0.14 -1.80 9.78 -39.45 -0.39 -2.18 16 17 C 0.08 0.92 11.18 -17.55 -0.20 0.72 16 18 N -0.47 -6.36 10.36 -13.20 -0.14 -6.50 16 19 C 0.06 0.86 11.17 -17.47 -0.20 0.67 16 20 C 0.08 1.20 7.29 -39.28 -0.29 0.92 16 21 F -0.12 -2.13 16.80 2.25 0.04 -2.09 16 22 H 0.03 0.58 6.61 -51.93 -0.34 0.24 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.32 6.03 6.61 -39.29 -0.26 5.77 16 29 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 30 H 0.09 1.87 7.84 -51.93 -0.41 1.46 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 284.35 15.07 4.29 4.29 Total: -1.00 -29.20 284.35 -7.09 -36.29 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.22 Total: 3.19 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.97 Total: -12.28 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.19 Total: -45.92 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.20 -7.09 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449242091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.034 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds