Wall clock time and date at job start Sun Mar 29 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99539 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99608 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99614 * 3 2 1 7 7 C 1.37885 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99708 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 C 1.52997 * 115.55191 * 179.91349 * 15 14 12 17 17 C 1.52998 * 117.49977 * 34.32627 * 16 15 14 18 18 C 1.53001 * 117.49997 * 325.66503 * 16 15 14 19 19 C 1.53003 * 117.49998 * 34.20300 * 15 14 12 20 20 C 1.53004 * 117.49871 * 325.57981 * 15 14 12 21 21 H 0.96999 * 119.99804 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 23 23 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 24 24 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 25 25 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 26 26 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 27 27 H 0.97004 * 120.00041 * 359.97438 * 14 12 11 28 28 H 1.09007 * 115.55362 * 179.97438 * 16 15 14 29 29 H 1.08994 * 117.49863 * 0.02562 * 17 16 15 30 30 H 1.08999 * 117.49856 * 145.02352 * 17 16 15 31 31 H 1.08998 * 117.50439 * 214.97717 * 18 16 15 32 32 H 1.09007 * 117.49565 * 359.97438 * 18 16 15 33 33 H 1.08997 * 117.49844 * 359.97438 * 19 15 14 34 34 H 1.08997 * 117.49759 * 145.02603 * 19 15 14 35 35 H 1.08988 * 117.50069 * 214.98044 * 20 15 14 36 36 H 1.09001 * 117.49592 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4865 -2.6367 0.0009 12 6 6.1603 -3.8039 0.0065 13 8 5.5523 -4.8568 0.0111 14 7 7.5081 -3.8039 0.0070 15 6 8.2405 -5.0726 0.0125 16 6 9.7659 -4.9540 0.0105 17 6 10.3841 -3.7781 0.7694 18 6 10.3826 -3.7857 -0.7613 19 6 7.6220 -6.2488 -0.7457 20 6 7.6239 -6.2411 0.7843 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6801 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.6585 -3.1504 -0.8892 25 1 3.6578 -3.1507 0.8907 26 1 5.9715 -1.7966 0.0014 27 1 7.9931 -2.9639 0.0029 28 1 10.3110 -5.8980 0.0150 29 1 9.7041 -3.0893 1.2705 30 1 11.3359 -3.9484 1.2725 31 1 11.3335 -3.9608 -1.2645 32 1 9.7016 -3.1018 -1.2680 33 1 6.6699 -6.0788 -1.2483 34 1 8.3018 -6.9383 -1.2463 35 1 8.3049 -6.9253 1.2901 36 1 6.6735 -6.0656 1.2883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543375854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:42 Heat of formation + Delta-G solvation = 20.225680 kcal Electronic energy + Delta-G solvation = -16705.066957 eV Core-core repulsion = 13998.034229 eV Total energy + Delta-G solvation = -2707.032728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42565 -38.12429 -35.63421 -34.49113 -33.17781 -32.31671 -29.78650 -25.06809 -23.93408 -22.83049 -22.06177 -21.28575 -20.74397 -19.38861 -18.38670 -16.84289 -16.04560 -15.68363 -15.17198 -14.96697 -14.20101 -13.93488 -13.74907 -13.50048 -13.48061 -12.59917 -12.20002 -12.11597 -11.79338 -11.48695 -11.34198 -11.03608 -10.97557 -10.40053 -10.25139 -10.23652 -10.14630 -9.95975 -9.60255 -9.31024 -8.66806 -8.59834 -8.27246 -6.10664 -4.10633 2.86256 3.23131 3.25221 3.32808 3.34054 3.53332 4.19427 4.21974 4.37927 4.42350 4.56525 4.72167 4.89959 5.17255 5.22299 5.27329 5.34937 5.42146 5.70270 5.79557 5.80119 5.81878 6.07103 6.18526 6.24790 6.49896 6.58119 6.71640 6.82433 7.04435 7.24731 7.28957 7.67820 8.28538 8.46109 8.89680 8.94432 9.49474 11.02450 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.004672 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.451881 B = 5992.170485 C = 6544.737380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.701 3.299 13 O -0.587 6.587 14 N -0.719 5.719 15 C 0.142 3.858 16 C -0.114 4.114 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.173 4.173 20 C -0.173 4.173 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.017 0.983 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.391 0.609 27 H 0.395 0.605 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.234 -6.633 0.032 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.027 3.973 11 N -0.395 5.395 12 C 0.401 3.599 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.054 3.946 16 C -0.133 4.133 17 C -0.215 4.215 18 C -0.215 4.215 19 C -0.212 4.212 20 C -0.212 4.212 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.223 0.777 27 H 0.229 0.771 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 21.449 -7.459 0.036 22.709 hybrid contribution 0.782 1.774 -0.018 1.939 sum 22.232 -5.685 0.018 22.947 Atomic orbital electron populations 1.69905 1.06287 1.27036 1.50463 1.24997 0.94757 0.99123 0.94388 0.86747 0.80239 0.83568 0.78475 1.20241 1.21271 1.19144 1.20917 0.88625 0.94914 1.51593 0.90584 1.19796 0.97947 0.91442 0.96763 1.21375 0.74624 0.99844 1.01505 1.45568 1.08966 1.06187 1.78827 1.15993 0.80964 0.84935 0.78032 1.90860 1.67865 1.29970 1.57821 1.44417 1.04666 1.07679 1.80630 1.19620 0.87940 0.80304 1.06762 1.21744 0.90831 0.94891 1.05843 1.23009 1.02651 1.01364 0.94474 1.23011 1.02660 1.01465 0.94358 1.23432 1.03386 0.99114 0.95232 1.23426 1.03382 0.99252 0.95113 0.92554 0.96059 0.96495 0.92139 0.92115 0.77682 0.77071 0.86256 0.88600 0.88397 0.88397 0.88598 0.86843 0.89353 0.89353 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.61 16 10 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -12.43 5.56 -65.22 -0.36 -12.79 16 12 C 0.70 11.78 8.27 -86.92 -0.72 11.06 16 13 O -0.59 -11.79 11.82 5.29 0.06 -11.73 16 14 N -0.72 -9.17 5.28 -52.42 -0.28 -9.44 16 15 C 0.14 1.68 3.07 -131.82 -0.40 1.28 16 16 C -0.11 -0.99 5.84 -90.62 -0.53 -1.52 16 17 C -0.18 -1.33 9.84 -26.69 -0.26 -1.60 16 18 C -0.18 -1.33 9.84 -26.69 -0.26 -1.60 16 19 C -0.17 -2.24 9.44 -26.73 -0.25 -2.49 16 20 C -0.17 -2.24 9.44 -26.73 -0.25 -2.49 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 23 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.39 5.45 8.49 -40.82 -0.35 5.10 16 27 H 0.39 4.02 6.61 -40.82 -0.27 3.75 16 28 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.10 0.76 7.36 -51.93 -0.38 0.38 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.76 7.37 -51.93 -0.38 0.38 16 33 H 0.11 1.83 6.36 -51.93 -0.33 1.50 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.93 8.14 -51.94 -0.42 0.51 16 36 H 0.11 1.82 6.38 -51.93 -0.33 1.49 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -31.91 296.11 -8.62 -40.52 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.35 Total: 7.26 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.25 Total: -8.05 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.13 Total: -48.89 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.06 Total: -11.73 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.91 -8.62 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543375854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.749 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds