Wall clock time and date at job start Sun Mar 29 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99539 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99608 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99614 * 3 2 1 7 7 C 1.37885 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99708 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21586 * 120.00012 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99940 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00211 * 180.02562 * 14 12 11 16 16 C 1.52997 * 115.55191 * 179.91349 * 15 14 12 17 17 C 1.52998 * 117.49977 * 34.32627 * 16 15 14 18 18 C 1.53001 * 117.49997 * 325.66503 * 16 15 14 19 19 C 1.53003 * 117.49998 * 34.20300 * 15 14 12 20 20 C 1.53004 * 117.49871 * 325.57981 * 15 14 12 21 21 H 0.96999 * 119.99804 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 23 23 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 24 24 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 25 25 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 26 26 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 27 27 H 0.97004 * 120.00041 * 359.97438 * 14 12 11 28 28 H 1.09007 * 115.55362 * 179.97438 * 16 15 14 29 29 H 1.08994 * 117.49863 * 0.02562 * 17 16 15 30 30 H 1.08999 * 117.49856 * 145.02352 * 17 16 15 31 31 H 1.08998 * 117.50439 * 214.97717 * 18 16 15 32 32 H 1.09007 * 117.49565 * 359.97438 * 18 16 15 33 33 H 1.08997 * 117.49844 * 359.97438 * 19 15 14 34 34 H 1.08997 * 117.49759 * 145.02603 * 19 15 14 35 35 H 1.08988 * 117.50069 * 214.98044 * 20 15 14 36 36 H 1.09001 * 117.49592 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4865 -2.6367 0.0009 12 6 6.1603 -3.8039 0.0065 13 8 5.5523 -4.8568 0.0111 14 7 7.5081 -3.8039 0.0070 15 6 8.2405 -5.0726 0.0125 16 6 9.7659 -4.9540 0.0105 17 6 10.3841 -3.7781 0.7694 18 6 10.3826 -3.7857 -0.7613 19 6 7.6220 -6.2488 -0.7457 20 6 7.6239 -6.2411 0.7843 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6801 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.6585 -3.1504 -0.8892 25 1 3.6578 -3.1507 0.8907 26 1 5.9715 -1.7966 0.0014 27 1 7.9931 -2.9639 0.0029 28 1 10.3110 -5.8980 0.0150 29 1 9.7041 -3.0893 1.2705 30 1 11.3359 -3.9484 1.2725 31 1 11.3335 -3.9608 -1.2645 32 1 9.7016 -3.1018 -1.2680 33 1 6.6699 -6.0788 -1.2483 34 1 8.3018 -6.9383 -1.2463 35 1 8.3049 -6.9253 1.2901 36 1 6.6735 -6.0656 1.2883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543375854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:42 Heat of formation + Delta-G solvation = -2.029131 kcal Electronic energy + Delta-G solvation = -16706.031998 eV Core-core repulsion = 13998.034229 eV Total energy + Delta-G solvation = -2707.997769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61759 -39.16509 -36.84004 -35.79929 -34.89911 -33.88659 -31.57745 -26.87412 -24.90098 -23.56727 -22.88560 -22.81232 -22.30571 -20.44436 -19.68534 -18.91295 -17.13351 -16.64339 -16.51972 -16.29533 -16.07700 -15.20682 -15.15095 -14.85120 -14.59078 -14.49099 -13.35747 -13.20308 -13.03492 -12.92134 -12.36392 -12.29981 -12.15770 -12.02222 -11.76077 -11.69321 -11.52630 -11.10965 -11.08658 -10.90741 -10.79030 -10.07727 -9.43424 -8.30293 -6.37707 1.38795 1.41622 1.52802 1.62864 2.03798 2.36711 2.67313 3.04780 3.20710 3.33886 3.47677 3.81504 4.02685 4.14651 4.34144 4.35658 4.41589 4.43983 4.58900 4.74663 4.83709 4.83899 5.02128 5.10759 5.17856 5.19741 5.28172 5.40334 5.41399 5.44949 5.64213 5.66497 5.98158 6.22725 6.69574 7.09434 7.26791 7.58043 8.86658 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.004672 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.451881 B = 5992.170485 C = 6544.737380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.167 3.833 11 N -0.732 5.732 12 C 0.696 3.304 13 O -0.623 6.623 14 N -0.702 5.702 15 C 0.149 3.851 16 C -0.123 4.123 17 C -0.172 4.172 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.181 4.181 21 H 0.268 0.732 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.408 0.592 27 H 0.411 0.589 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.160 -5.153 0.035 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.049 4.049 10 C 0.042 3.958 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.504 6.504 14 N -0.357 5.357 15 C 0.060 3.940 16 C -0.141 4.141 17 C -0.209 4.209 18 C -0.209 4.209 19 C -0.219 4.219 20 C -0.219 4.219 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.244 0.756 27 H 0.248 0.752 28 H 0.156 0.844 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 25.445 -5.972 0.040 26.136 hybrid contribution -0.504 1.198 -0.021 1.300 sum 24.941 -4.774 0.019 25.394 Atomic orbital electron populations 1.70077 1.08606 1.28456 1.51946 1.26081 0.95682 1.03866 0.93619 0.85523 0.79626 0.77284 0.79332 1.18959 1.21210 1.16034 1.21246 0.91556 0.93394 1.51631 0.95354 1.19637 0.94384 0.92834 0.98027 1.20856 0.77006 0.98240 0.99685 1.45172 1.07319 1.07256 1.79022 1.16151 0.82190 0.84168 0.77850 1.90861 1.69041 1.31321 1.59200 1.44264 1.03161 1.09176 1.79125 1.19932 0.89778 0.79189 1.05052 1.21774 0.88165 0.96498 1.07699 1.23093 1.03067 1.00079 0.94636 1.23095 1.03075 1.00185 0.94514 1.23361 1.02521 1.00929 0.95125 1.23356 1.02525 1.01052 0.95010 0.92299 0.94512 0.94639 0.94113 0.94132 0.75571 0.75185 0.84411 0.89105 0.86682 0.86681 0.89100 0.90586 0.86613 0.86613 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.00 0.27 5.47 84.66 0.46 0.73 16 3 Si 0.96 42.41 27.47 68.60 1.88 44.29 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 7 C -0.54 -31.13 9.66 25.60 0.25 -30.89 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.49 4.15 29.85 0.12 -0.37 16 10 C 0.17 6.98 5.61 86.38 0.48 7.47 16 11 N -0.73 -23.81 5.56 -478.53 -2.66 -26.47 16 12 C 0.70 23.27 8.27 179.06 1.48 24.75 16 13 O -0.62 -25.98 11.82 -3.99 -0.05 -26.03 16 14 N -0.70 -16.84 5.28 -438.01 -2.31 -19.15 16 15 C 0.15 3.26 3.07 3.61 0.01 3.27 16 16 C -0.12 -1.71 5.84 -10.79 -0.06 -1.78 16 17 C -0.17 -1.93 9.84 30.62 0.30 -1.63 16 18 C -0.17 -1.93 9.84 30.62 0.30 -1.63 16 19 C -0.18 -4.59 9.44 30.60 0.29 -4.30 16 20 C -0.18 -4.59 9.44 30.60 0.29 -4.30 16 21 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 23 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 24 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.41 10.31 8.49 -92.70 -0.79 9.53 16 27 H 0.41 7.28 6.61 -92.71 -0.61 6.67 16 28 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.09 1.13 7.36 -2.39 -0.02 1.11 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.13 7.37 -2.38 -0.02 1.11 16 33 H 0.08 2.54 6.36 -2.39 -0.02 2.53 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.53 6.38 -2.39 -0.02 2.52 16 Total: -1.00 -72.59 296.11 0.73 -71.86 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.37 Total: 23.51 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.93 Total: -8.67 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.67 Total: -104.96 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Total: -72.59 0.73 -71.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543375854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.834 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds