Wall clock time and date at job start Sun Mar 29 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48504 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47309 * 300.00375 * 3 2 1 6 6 H 1.48506 * 109.46966 * 60.00602 * 3 2 1 7 7 C 1.37886 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99328 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.46648 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99697 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.69538 * 34.44653 * 11 10 9 13 13 C 1.53435 * 109.69486 * 273.84859 * 11 10 9 14 14 C 1.52957 * 108.68328 * 175.02853 * 13 11 10 15 15 C 1.50091 * 110.44972 * 50.49849 * 14 13 11 16 16 O 1.21282 * 118.33433 * 160.27696 * 15 14 13 17 17 N 1.33684 * 123.32301 * 340.27912 * 15 14 13 18 18 C 1.45775 * 122.85906 * 2.11971 * 17 15 14 19 19 C 1.53508 * 113.61306 * 114.51415 * 18 17 15 20 20 C 1.53824 * 86.99884 * 89.44153 * 19 18 17 21 21 C 1.53487 * 113.65406 * 212.36864 * 18 17 15 22 22 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47310 * 60.00574 * 9 7 2 24 24 H 1.08994 * 109.47536 * 299.99601 * 9 7 2 25 25 H 1.00899 * 110.99891 * 303.95158 * 10 9 7 26 26 H 1.08995 * 109.60376 * 294.79462 * 13 11 10 27 27 H 1.09006 * 109.59812 * 55.10910 * 13 11 10 28 28 H 1.09000 * 109.30334 * 170.79694 * 14 13 11 29 29 H 1.09004 * 109.30783 * 290.39350 * 14 13 11 30 30 H 0.97006 * 118.56820 * 182.14469 * 17 15 14 31 31 H 1.09003 * 113.62850 * 203.97015 * 19 18 17 32 32 H 1.09001 * 113.62829 * 334.91664 * 19 18 17 33 33 H 1.08993 * 113.60979 * 270.66130 * 20 19 18 34 34 H 1.09005 * 113.68082 * 139.79449 * 20 19 18 35 35 H 1.08991 * 113.62709 * 25.12767 * 21 18 17 36 36 H 1.09002 * 113.62036 * 155.98245 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5864 -4.8263 -0.5819 13 6 1.1730 -5.3158 1.4400 14 6 0.3376 -6.5967 1.4058 15 6 0.9983 -7.6307 0.5414 16 8 0.6805 -8.7919 0.6881 17 7 1.9193 -7.3365 -0.3819 18 6 2.4064 -5.9815 -0.6094 19 6 3.8902 -5.7952 -0.2629 20 6 4.1967 -6.1988 -1.7152 21 6 2.7853 -5.7005 -2.0700 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8404 -3.5487 -0.7819 26 1 2.0959 -5.4957 1.9911 27 1 0.6070 -4.5201 1.9244 28 1 0.2339 -6.9863 2.4184 29 1 -0.6501 -6.3722 1.0031 30 1 2.2787 -8.0559 -0.9242 31 1 4.1584 -4.7647 -0.0299 32 1 4.2591 -6.5072 0.4755 33 1 4.3278 -7.2722 -1.8516 34 1 4.9942 -5.6136 -2.1733 35 1 2.2648 -6.3360 -2.7863 36 1 2.7474 -4.6440 -2.3355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570626932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:54 Heat of formation + Delta-G solvation = -21.187933 kcal Electronic energy + Delta-G solvation = -17559.110146 eV Core-core repulsion = 14850.281589 eV Total energy + Delta-G solvation = -2708.828557 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96054 -38.49483 -35.49007 -33.87930 -32.64352 -31.42030 -28.00092 -25.72708 -25.45057 -24.09512 -22.32602 -21.17708 -20.32609 -18.29287 -17.00542 -16.48061 -15.98874 -15.39447 -14.95454 -14.60646 -14.53779 -14.05435 -13.78149 -13.45609 -12.85763 -12.53944 -12.25362 -12.16892 -11.72194 -11.42417 -11.37441 -10.96501 -10.74843 -10.69869 -10.62596 -10.43173 -10.22628 -10.01279 -9.45814 -9.24209 -8.94398 -8.55779 -7.47738 -6.10501 -4.12837 2.70244 3.26528 3.28601 3.34537 3.38624 4.35395 4.45216 4.55605 4.65581 4.76718 4.88529 5.03404 5.22868 5.26063 5.30643 5.56947 5.63132 5.78717 5.83904 5.87320 5.93466 5.95708 6.08571 6.13131 6.35242 6.44074 6.54270 6.87414 7.13988 7.30056 7.40447 7.69824 8.03332 8.23645 8.28312 8.47194 8.96258 9.52678 11.00523 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.006278 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.219284 B = 4458.770675 C = 5027.041235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.676 5.676 11 C 0.092 3.908 12 H 0.047 0.953 13 C -0.109 4.109 14 C -0.136 4.136 15 C 0.525 3.475 16 O -0.568 6.568 17 N -0.694 5.694 18 C 0.138 3.862 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.148 4.148 22 H 0.261 0.739 23 H -0.012 1.012 24 H 0.031 0.969 25 H 0.331 0.669 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.396 0.604 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -10.765 -1.942 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.309 5.309 11 C -0.019 4.019 12 H 0.064 0.936 13 C -0.148 4.148 14 C -0.177 4.177 15 C 0.313 3.687 16 O -0.447 6.447 17 N -0.344 5.344 18 C 0.050 3.950 19 C -0.180 4.180 20 C -0.182 4.182 21 C -0.187 4.187 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.049 0.951 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.232 0.768 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.855 -11.050 -1.044 12.115 hybrid contribution 0.139 0.713 -1.207 1.409 sum 4.994 -10.337 -2.251 11.699 Atomic orbital electron populations 1.69964 1.06093 1.26792 1.50716 1.24983 0.94861 0.99400 0.95254 0.86438 0.80051 0.83345 0.77544 1.19639 1.21113 1.20980 1.21183 0.93536 0.90111 1.50572 0.91862 1.19634 0.90542 0.87106 0.95987 1.60866 1.20912 1.00171 1.48950 1.21461 0.95072 0.90009 0.95358 0.93560 1.21626 1.00170 0.95553 0.97430 1.21631 1.00593 0.94982 1.00460 1.20410 0.78426 0.89890 0.79940 1.90720 1.63268 1.21090 1.69655 1.45294 1.41879 1.09202 1.38061 1.21386 0.94872 0.82398 0.96356 1.23455 0.94245 1.04095 0.96223 1.22897 0.97141 1.00682 0.97495 1.23386 0.96835 1.02922 0.95509 0.92894 0.99447 0.95125 0.84910 0.90925 0.89901 0.88246 0.88394 0.76766 0.86710 0.91465 0.90735 0.90870 0.91118 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.74 9.32 -34.44 -0.32 -14.06 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.19 4.67 5.25 -4.97 -0.03 4.65 16 10 N -0.68 -12.69 5.27 -107.83 -0.57 -13.26 16 11 C 0.09 1.47 2.06 -67.56 -0.14 1.33 16 12 H 0.05 0.81 7.80 -51.93 -0.41 0.40 16 13 C -0.11 -1.64 5.56 -26.53 -0.15 -1.78 16 14 C -0.14 -1.85 5.98 -28.20 -0.17 -2.02 16 15 C 0.53 7.92 7.75 -11.77 -0.09 7.82 16 16 O -0.57 -10.33 17.81 5.56 0.10 -10.23 16 17 N -0.69 -9.07 5.09 -48.10 -0.25 -9.31 16 18 C 0.14 1.80 1.29 -131.77 -0.17 1.63 16 19 C -0.14 -1.72 7.09 -26.04 -0.18 -1.91 16 20 C -0.14 -1.49 7.88 -25.87 -0.20 -1.70 16 21 C -0.15 -1.74 7.10 -26.05 -0.18 -1.93 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H -0.01 -0.32 8.06 -51.93 -0.42 -0.74 16 24 H 0.03 0.80 7.48 -51.93 -0.39 0.41 16 25 H 0.33 5.87 5.66 -39.29 -0.22 5.65 16 26 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 27 H 0.08 1.35 7.47 -51.93 -0.39 0.96 16 28 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.40 4.67 8.55 -40.82 -0.35 4.32 16 31 H 0.11 1.55 6.34 -51.93 -0.33 1.22 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.26 6.74 -51.93 -0.35 0.91 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -29.84 288.17 -7.74 -37.58 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.35 Total: 6.60 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.73 Total: -6.50 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.08 Total: -47.66 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.10 Total: -10.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.84 -7.74 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570626932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.391 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds