Wall clock time and date at job start Sun Mar 29 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48504 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47309 * 300.00375 * 3 2 1 6 6 H 1.48506 * 109.46966 * 60.00602 * 3 2 1 7 7 C 1.37886 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99328 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.46648 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99697 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.69538 * 34.44653 * 11 10 9 13 13 C 1.53435 * 109.69486 * 273.84859 * 11 10 9 14 14 C 1.52957 * 108.68328 * 175.02853 * 13 11 10 15 15 C 1.50091 * 110.44972 * 50.49849 * 14 13 11 16 16 O 1.21282 * 118.33433 * 160.27696 * 15 14 13 17 17 N 1.33684 * 123.32301 * 340.27912 * 15 14 13 18 18 C 1.45775 * 122.85906 * 2.11971 * 17 15 14 19 19 C 1.53508 * 113.61306 * 114.51415 * 18 17 15 20 20 C 1.53824 * 86.99884 * 89.44153 * 19 18 17 21 21 C 1.53487 * 113.65406 * 212.36864 * 18 17 15 22 22 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47310 * 60.00574 * 9 7 2 24 24 H 1.08994 * 109.47536 * 299.99601 * 9 7 2 25 25 H 1.00899 * 110.99891 * 303.95158 * 10 9 7 26 26 H 1.08995 * 109.60376 * 294.79462 * 13 11 10 27 27 H 1.09006 * 109.59812 * 55.10910 * 13 11 10 28 28 H 1.09000 * 109.30334 * 170.79694 * 14 13 11 29 29 H 1.09004 * 109.30783 * 290.39350 * 14 13 11 30 30 H 0.97006 * 118.56820 * 182.14469 * 17 15 14 31 31 H 1.09003 * 113.62850 * 203.97015 * 19 18 17 32 32 H 1.09001 * 113.62829 * 334.91664 * 19 18 17 33 33 H 1.08993 * 113.60979 * 270.66130 * 20 19 18 34 34 H 1.09005 * 113.68082 * 139.79449 * 20 19 18 35 35 H 1.08991 * 113.62709 * 25.12767 * 21 18 17 36 36 H 1.09002 * 113.62036 * 155.98245 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5864 -4.8263 -0.5819 13 6 1.1730 -5.3158 1.4400 14 6 0.3376 -6.5967 1.4058 15 6 0.9983 -7.6307 0.5414 16 8 0.6805 -8.7919 0.6881 17 7 1.9193 -7.3365 -0.3819 18 6 2.4064 -5.9815 -0.6094 19 6 3.8902 -5.7952 -0.2629 20 6 4.1967 -6.1988 -1.7152 21 6 2.7853 -5.7005 -2.0700 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8404 -3.5487 -0.7819 26 1 2.0959 -5.4957 1.9911 27 1 0.6070 -4.5201 1.9244 28 1 0.2339 -6.9863 2.4184 29 1 -0.6501 -6.3722 1.0031 30 1 2.2787 -8.0559 -0.9242 31 1 4.1584 -4.7647 -0.0299 32 1 4.2591 -6.5072 0.4755 33 1 4.3278 -7.2722 -1.8516 34 1 4.9942 -5.6136 -2.1733 35 1 2.2648 -6.3360 -2.7863 36 1 2.7474 -4.6440 -2.3355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570626932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:54 Heat of formation + Delta-G solvation = -42.009107 kcal Electronic energy + Delta-G solvation = -17560.013020 eV Core-core repulsion = 14850.281589 eV Total energy + Delta-G solvation = -2709.731431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.11681 -39.70233 -36.93722 -35.32775 -34.36333 -32.81800 -29.60103 -27.12386 -26.70814 -25.24578 -23.95970 -22.65967 -21.39723 -19.55255 -18.56154 -18.00032 -17.26311 -16.72814 -16.39895 -16.21278 -15.78138 -15.28484 -14.98004 -14.79172 -14.42167 -14.17372 -13.68913 -13.40333 -13.15050 -12.93808 -12.68973 -12.59685 -12.39268 -12.00734 -11.95847 -11.66255 -11.52136 -11.38827 -11.19714 -10.66906 -10.63430 -10.08351 -9.14175 -8.19872 -6.29803 1.43807 1.45276 1.49941 1.57937 2.16102 2.42652 3.14868 3.27350 3.39952 3.52661 3.72007 3.75982 3.92732 4.06851 4.22604 4.38817 4.48154 4.59549 4.80770 4.81385 4.88610 5.00372 5.04765 5.11410 5.15260 5.23072 5.27067 5.32125 5.46677 5.65793 5.80474 6.05278 6.23473 6.45265 6.73093 6.92217 7.12535 7.41279 8.91793 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.006278 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.219284 B = 4458.770675 C = 5027.041235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.666 5.666 11 C 0.089 3.911 12 H 0.030 0.970 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.525 3.475 16 O -0.599 6.599 17 N -0.681 5.681 18 C 0.138 3.862 19 C -0.140 4.140 20 C -0.128 4.128 21 C -0.148 4.148 22 H 0.264 0.736 23 H -0.039 1.039 24 H 0.005 0.995 25 H 0.339 0.661 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.406 0.594 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -11.134 -2.376 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.300 5.300 11 C -0.022 4.022 12 H 0.048 0.952 13 C -0.142 4.142 14 C -0.171 4.171 15 C 0.313 3.687 16 O -0.482 6.482 17 N -0.331 5.331 18 C 0.050 3.950 19 C -0.179 4.179 20 C -0.166 4.166 21 C -0.186 4.186 22 H 0.072 0.928 23 H -0.022 1.022 24 H 0.023 0.977 25 H 0.160 0.840 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.244 0.756 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.591 -11.429 -1.497 13.278 hybrid contribution -0.410 0.801 -1.074 1.401 sum 6.181 -10.629 -2.571 12.561 Atomic orbital electron populations 1.70091 1.07781 1.27805 1.51795 1.25893 0.95675 1.03228 0.94809 0.85341 0.79144 0.78662 0.77487 1.18422 1.20659 1.20787 1.21566 0.93920 0.91238 1.50081 0.91422 1.19245 0.90572 0.88534 0.93435 1.60719 1.19818 1.00054 1.49361 1.21483 0.94872 0.89664 0.96173 0.95242 1.21540 1.00376 0.95720 0.96563 1.21604 1.00360 0.93774 1.01315 1.20553 0.78481 0.89505 0.80116 1.90712 1.64458 1.22237 1.70756 1.45160 1.41148 1.09371 1.37458 1.21358 0.94707 0.81426 0.97496 1.23400 0.92991 1.03544 0.97943 1.22864 0.96276 1.01968 0.95443 1.23374 0.98174 1.02580 0.94494 0.92767 1.02150 0.97727 0.84008 0.90443 0.91681 0.86679 0.87861 0.75584 0.88047 0.90880 0.88818 0.89711 0.90000 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.53 -28.42 9.32 25.60 0.24 -28.19 16 8 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 9 C 0.21 10.42 5.25 85.56 0.45 10.87 16 10 N -0.67 -25.18 5.27 -495.06 -2.61 -27.79 16 11 C 0.09 2.83 2.06 45.01 0.09 2.92 16 12 H 0.03 1.05 7.80 -2.39 -0.02 1.03 16 13 C -0.10 -3.09 5.56 30.73 0.17 -2.91 16 14 C -0.13 -3.44 5.98 29.64 0.18 -3.26 16 15 C 0.52 15.15 7.75 87.64 0.68 15.83 16 16 O -0.60 -21.13 17.81 -3.04 -0.05 -21.19 16 17 N -0.68 -16.56 5.09 -425.09 -2.17 -18.72 16 18 C 0.14 3.41 1.29 4.03 0.01 3.41 16 19 C -0.14 -3.11 7.09 31.04 0.22 -2.89 16 20 C -0.13 -2.24 7.88 31.15 0.25 -2.00 16 21 C -0.15 -3.18 7.10 31.04 0.22 -2.96 16 22 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 23 H -0.04 -2.12 8.06 -2.39 -0.02 -2.14 16 24 H 0.00 0.25 7.48 -2.39 -0.02 0.23 16 25 H 0.34 11.92 5.66 -89.69 -0.51 11.41 16 26 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 27 H 0.06 2.17 7.47 -2.38 -0.02 2.15 16 28 H 0.11 2.69 8.14 -2.39 -0.02 2.68 16 29 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.41 8.56 8.55 -92.70 -0.79 7.77 16 31 H 0.10 2.57 6.34 -2.39 -0.02 2.56 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.13 6.74 -2.39 -0.02 2.11 16 Total: -1.00 -63.79 288.17 0.23 -63.56 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.21 Total: 22.48 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 2.96 Total: -8.59 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.49 Total: -100.95 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.79 0.23 -63.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570626932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.553 kcal (2) G-P(sol) polarization free energy of solvation -63.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds