Wall clock time and date at job start Sun Mar 29 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46861 * 179.97438 * 10 9 7 12 12 C 1.47716 * 111.00151 * 69.87172 * 11 10 9 13 13 C 1.54404 * 107.20017 * 122.12974 * 12 11 10 14 14 C 1.55331 * 103.13198 * 22.19555 * 13 12 11 15 15 C 1.46724 * 111.00076 * 190.34394 * 11 10 9 16 16 C 1.53618 * 111.40241 * 94.56739 * 15 11 10 17 17 C 1.54700 * 101.51709 * 262.08226 * 16 15 11 18 18 N 1.46874 * 105.52239 * 335.47627 * 17 16 15 19 19 C 1.34749 * 111.25409 * 16.81686 * 18 17 16 20 20 O 1.21285 * 125.12895 * 178.96822 * 19 18 17 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 25 25 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 26 26 H 1.08995 * 109.89417 * 241.53061 * 12 11 10 27 27 H 1.09005 * 109.89090 * 2.57558 * 12 11 10 28 28 H 1.09006 * 110.68154 * 140.59935 * 13 12 11 29 29 H 1.08992 * 110.69022 * 263.78239 * 13 12 11 30 30 H 1.09000 * 111.01047 * 83.47227 * 14 13 12 31 31 H 1.08996 * 111.01198 * 207.30254 * 14 13 12 32 32 H 1.09001 * 111.01468 * 20.14330 * 16 15 11 33 33 H 1.09004 * 111.01078 * 144.02348 * 16 15 11 34 34 H 1.08996 * 110.23332 * 216.45797 * 17 16 15 35 35 H 1.09004 * 110.30519 * 94.52360 * 17 16 15 36 36 H 0.97005 * 124.37518 * 196.84990 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0201 -2.1620 1.2958 13 6 6.9161 -3.2848 1.8617 14 6 7.2988 -4.1020 0.5974 15 6 6.0165 -3.9839 -0.2451 16 6 6.3237 -4.2025 -1.7343 17 6 5.0522 -4.9470 -2.2059 18 7 4.5045 -5.5896 -1.0042 19 6 5.0244 -5.0525 0.1170 20 8 4.7348 -5.3817 1.2478 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.6579 -3.1505 0.8908 25 1 3.6587 -3.1502 -0.8892 26 1 6.6091 -1.2571 1.1465 27 1 5.1970 -1.9598 1.9813 28 1 7.8053 -2.8668 2.3336 29 1 6.3598 -3.9033 2.5661 30 1 8.1474 -3.6514 0.0829 31 1 7.5057 -5.1415 0.8518 32 1 6.4350 -3.2510 -2.2542 33 1 7.2106 -4.8229 -1.8635 34 1 5.3105 -5.6991 -2.9513 35 1 4.3312 -4.2407 -2.6177 36 1 3.8529 -6.3082 -1.0160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593996186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:50 Heat of formation + Delta-G solvation = -29.946502 kcal Electronic energy + Delta-G solvation = -17967.135285 eV Core-core repulsion = 15257.926928 eV Total energy + Delta-G solvation = -2709.208357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16384 -37.31902 -36.06294 -33.78631 -31.98500 -30.62661 -29.00037 -27.74860 -24.61450 -23.46491 -22.18591 -21.20403 -19.85314 -18.72755 -17.28664 -17.00581 -16.33903 -15.08801 -14.96096 -14.44805 -14.14720 -13.82931 -13.51298 -13.29066 -12.99751 -12.63833 -12.48520 -12.31347 -11.90731 -11.57351 -11.26396 -11.15036 -10.89312 -10.71159 -10.66332 -10.11823 -9.78785 -9.73119 -9.65244 -9.20298 -8.99206 -8.52365 -7.95563 -6.03140 -4.01463 2.69867 3.33059 3.40048 3.45474 3.45845 4.18377 4.39430 4.47120 4.59175 4.81882 4.89265 5.17035 5.23699 5.30964 5.33036 5.54498 5.70314 5.76253 5.83313 5.89566 6.01304 6.08012 6.12435 6.22147 6.33077 6.47894 6.73948 6.89754 7.08551 7.10611 7.22260 7.48773 7.55467 7.83317 8.38504 8.54221 9.00762 9.58940 11.10259 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.007715 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.842791 B = 3628.495096 C = 3974.825971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.003 4.003 10 C 0.054 3.946 11 N -0.498 5.498 12 C 0.040 3.960 13 C -0.141 4.141 14 C -0.104 4.104 15 C 0.064 3.936 16 C -0.117 4.117 17 C 0.098 3.902 18 N -0.734 5.734 19 C 0.514 3.486 20 O -0.528 6.528 21 H 0.263 0.737 22 H 0.020 0.980 23 H 0.016 0.984 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.728 -8.719 -3.729 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.040 4.040 10 C -0.072 4.072 11 N -0.223 5.223 12 C -0.088 4.088 13 C -0.179 4.179 14 C -0.143 4.143 15 C -0.030 4.030 16 C -0.156 4.156 17 C -0.026 4.026 18 N -0.390 5.390 19 C 0.298 3.702 20 O -0.403 6.403 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 15.644 -8.334 -3.521 18.072 hybrid contribution -0.462 0.052 0.484 0.671 sum 15.181 -8.283 -3.037 17.558 Atomic orbital electron populations 1.69919 1.06320 1.26896 1.51131 1.24996 0.94718 0.99167 0.94474 0.86742 0.80371 0.83424 0.78553 1.20229 1.18896 1.21483 1.21059 0.89369 0.94473 1.51026 0.91289 1.19516 0.96468 0.91197 0.96847 1.22478 0.83464 1.00990 1.00288 1.63830 1.10644 1.16466 1.31318 1.22938 0.98325 0.97673 0.89817 1.22864 0.99835 0.97501 0.97689 1.22464 0.95527 1.00648 0.95653 1.22066 0.94826 0.89283 0.96823 1.22534 0.96678 1.02044 0.94299 1.22184 0.96068 0.97024 0.87318 1.46328 1.45852 1.39281 1.07500 1.21152 0.82204 0.82355 0.84480 1.90714 1.63621 1.64485 1.21452 0.92737 0.96148 0.96554 0.94544 0.91443 0.90501 0.91731 0.90975 0.90609 0.89906 0.91009 0.87869 0.90000 0.90530 0.90418 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 -0.06 4.07 -27.88 -0.11 -0.18 16 10 C 0.05 1.16 3.54 -3.82 -0.01 1.15 16 11 N -0.50 -8.72 4.82 -218.20 -1.05 -9.77 16 12 C 0.04 0.66 6.25 -2.64 -0.02 0.65 16 13 C -0.14 -1.95 6.64 -24.76 -0.16 -2.11 16 14 C -0.10 -1.31 5.81 -25.03 -0.15 -1.45 16 15 C 0.06 0.93 0.72 -132.29 -0.10 0.84 16 16 C -0.12 -1.29 6.41 -25.52 -0.16 -1.46 16 17 C 0.10 1.07 7.09 -2.94 -0.02 1.05 16 18 N -0.73 -9.85 6.01 -59.30 -0.36 -10.20 16 19 C 0.51 8.58 5.19 -11.22 -0.06 8.53 16 20 O -0.53 -10.74 16.64 5.55 0.09 -10.65 16 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 22 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 23 H 0.02 0.41 6.17 -51.93 -0.32 0.09 16 24 H 0.04 0.87 7.03 -51.93 -0.36 0.50 16 25 H 0.07 1.42 6.10 -51.93 -0.32 1.10 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.21 6.88 -51.93 -0.36 0.85 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.19 7.58 -51.93 -0.39 0.79 16 30 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 31 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 32 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.93 7.51 -51.93 -0.39 0.54 16 36 H 0.41 4.83 8.96 -40.82 -0.37 4.47 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -33.93 281.09 -7.62 -41.55 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.42 Total: 1.59 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.22 Total: -6.66 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.63 Total: -47.52 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.93 -7.62 -41.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593996186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.601 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds