Wall clock time and date at job start Sun Mar 29 2020 22:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46861 * 179.97438 * 10 9 7 12 12 C 1.47716 * 111.00151 * 69.87172 * 11 10 9 13 13 C 1.54404 * 107.20017 * 122.12974 * 12 11 10 14 14 C 1.55331 * 103.13198 * 22.19555 * 13 12 11 15 15 C 1.46724 * 111.00076 * 190.34394 * 11 10 9 16 16 C 1.53618 * 111.40241 * 94.56739 * 15 11 10 17 17 C 1.54700 * 101.51709 * 262.08226 * 16 15 11 18 18 N 1.46874 * 105.52239 * 335.47627 * 17 16 15 19 19 C 1.34749 * 111.25409 * 16.81686 * 18 17 16 20 20 O 1.21285 * 125.12895 * 178.96822 * 19 18 17 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 25 25 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 26 26 H 1.08995 * 109.89417 * 241.53061 * 12 11 10 27 27 H 1.09005 * 109.89090 * 2.57558 * 12 11 10 28 28 H 1.09006 * 110.68154 * 140.59935 * 13 12 11 29 29 H 1.08992 * 110.69022 * 263.78239 * 13 12 11 30 30 H 1.09000 * 111.01047 * 83.47227 * 14 13 12 31 31 H 1.08996 * 111.01198 * 207.30254 * 14 13 12 32 32 H 1.09001 * 111.01468 * 20.14330 * 16 15 11 33 33 H 1.09004 * 111.01078 * 144.02348 * 16 15 11 34 34 H 1.08996 * 110.23332 * 216.45797 * 17 16 15 35 35 H 1.09004 * 110.30519 * 94.52360 * 17 16 15 36 36 H 0.97005 * 124.37518 * 196.84990 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0201 -2.1620 1.2958 13 6 6.9161 -3.2848 1.8617 14 6 7.2988 -4.1020 0.5974 15 6 6.0165 -3.9839 -0.2451 16 6 6.3237 -4.2025 -1.7343 17 6 5.0522 -4.9470 -2.2059 18 7 4.5045 -5.5896 -1.0042 19 6 5.0244 -5.0525 0.1170 20 8 4.7348 -5.3817 1.2478 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.6579 -3.1505 0.8908 25 1 3.6587 -3.1502 -0.8892 26 1 6.6091 -1.2571 1.1465 27 1 5.1970 -1.9598 1.9813 28 1 7.8053 -2.8668 2.3336 29 1 6.3598 -3.9033 2.5661 30 1 8.1474 -3.6514 0.0829 31 1 7.5057 -5.1415 0.8518 32 1 6.4350 -3.2510 -2.2542 33 1 7.2106 -4.8229 -1.8635 34 1 5.3105 -5.6991 -2.9513 35 1 4.3312 -4.2407 -2.6177 36 1 3.8529 -6.3082 -1.0160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593996186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:49 Heat of formation + Delta-G solvation = -57.275992 kcal Electronic energy + Delta-G solvation = -17968.320381 eV Core-core repulsion = 15257.926928 eV Total energy + Delta-G solvation = -2710.393453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36633 -38.65312 -37.25679 -35.69099 -33.89200 -31.71272 -30.77084 -28.81800 -26.39511 -24.75369 -23.49201 -22.47151 -21.40976 -20.05312 -19.04031 -18.41864 -17.75358 -16.53925 -16.31960 -16.10622 -15.59800 -15.17422 -14.91753 -14.67532 -14.54902 -14.15390 -13.85741 -13.44155 -13.27155 -13.15498 -12.83782 -12.52279 -12.23733 -12.08693 -11.86677 -11.73470 -11.67169 -11.51186 -11.40748 -10.97517 -10.79720 -10.09947 -9.39732 -8.33564 -6.39331 1.34858 1.37495 1.42195 1.50423 2.34363 2.39819 2.89529 3.01651 3.33903 3.51375 3.72372 3.91019 4.11531 4.17534 4.26158 4.39414 4.39792 4.64005 4.72158 4.80148 4.85997 4.90150 4.93944 5.01808 5.11287 5.18394 5.24966 5.31561 5.41675 5.54910 5.81987 5.91445 5.97581 6.02893 6.22529 6.67123 7.18308 7.25479 8.83498 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.007715 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.842791 B = 3628.495096 C = 3974.825971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.248 1.248 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.022 0.978 9 C 0.007 3.993 10 C 0.076 3.924 11 N -0.493 5.493 12 C 0.032 3.968 13 C -0.136 4.136 14 C -0.096 4.096 15 C 0.053 3.947 16 C -0.107 4.107 17 C 0.093 3.907 18 N -0.728 5.728 19 C 0.498 3.502 20 O -0.579 6.579 21 H 0.268 0.732 22 H 0.032 0.968 23 H 0.015 0.985 24 H -0.002 1.002 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.030 0.970 28 H 0.104 0.896 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.139 -7.926 -5.316 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.172 1.172 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.040 0.960 9 C -0.031 4.031 10 C -0.052 4.052 11 N -0.217 5.217 12 C -0.095 4.095 13 C -0.174 4.174 14 C -0.134 4.134 15 C -0.041 4.041 16 C -0.145 4.145 17 C -0.031 4.031 18 N -0.382 5.382 19 C 0.283 3.717 20 O -0.458 6.458 21 H 0.077 0.923 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.016 0.984 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.049 0.951 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 19.070 -7.565 -5.155 21.153 hybrid contribution -1.623 -0.301 0.976 1.917 sum 17.447 -7.866 -4.179 19.589 Atomic orbital electron populations 1.70075 1.08405 1.28376 1.52225 1.26040 0.95669 1.03699 0.93664 0.85557 0.79281 0.77570 0.79632 1.18356 1.17161 1.20889 1.21347 0.91942 0.92967 1.51320 0.95991 1.19366 0.93302 0.93457 0.96982 1.22033 0.86473 0.98313 0.98391 1.63870 1.07400 1.18661 1.31764 1.23061 0.97910 0.99620 0.88952 1.22818 1.00074 0.96465 0.98083 1.22540 0.95270 1.01151 0.94444 1.22370 0.94966 0.86763 0.99963 1.22637 0.97885 1.03058 0.90954 1.22452 0.95775 0.97947 0.86888 1.46469 1.45180 1.38802 1.07783 1.21700 0.82751 0.82903 0.84362 1.90679 1.65402 1.66163 1.23508 0.92315 0.95002 0.96646 0.98359 0.91631 0.88424 0.95112 0.87733 0.93448 0.86465 0.90310 0.87274 0.86309 0.86318 0.91760 0.74969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.96 45.32 27.47 68.60 1.88 47.21 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.54 -32.67 9.66 25.60 0.25 -32.42 16 8 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 9 C 0.01 0.33 4.07 29.85 0.12 0.45 16 10 C 0.08 3.32 3.54 86.30 0.31 3.62 16 11 N -0.49 -16.68 4.82 -844.24 -4.07 -20.75 16 12 C 0.03 1.03 6.25 86.62 0.54 1.57 16 13 C -0.14 -3.55 6.64 31.87 0.21 -3.34 16 14 C -0.10 -2.09 5.81 31.69 0.18 -1.91 16 15 C 0.05 1.43 0.72 3.18 0.00 1.43 16 16 C -0.11 -1.94 6.41 31.38 0.20 -1.74 16 17 C 0.09 1.76 7.09 86.89 0.62 2.37 16 18 N -0.73 -19.02 6.01 -459.94 -2.76 -21.78 16 19 C 0.50 16.64 5.19 87.52 0.45 17.09 16 20 O -0.58 -24.59 16.64 -3.04 -0.05 -24.64 16 21 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 22 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 23 H 0.02 0.76 6.17 -2.39 -0.01 0.75 16 24 H 0.00 -0.10 7.03 -2.39 -0.02 -0.11 16 25 H 0.07 2.84 6.10 -2.39 -0.01 2.83 16 26 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.03 1.18 6.88 -2.38 -0.02 1.16 16 28 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.05 1.50 7.58 -2.39 -0.02 1.48 16 30 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 32 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.12 1.33 7.92 -2.38 -0.02 1.32 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.42 7.51 -2.38 -0.02 1.41 16 36 H 0.41 9.74 8.96 -92.70 -0.83 8.91 16 Total: -1.00 -78.13 281.09 -1.16 -79.29 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.19 Total: 13.65 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 3.35 Total: -12.02 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -6.53 Total: -103.49 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -78.13 -1.16 -79.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593996186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.011 kcal (2) G-P(sol) polarization free energy of solvation -78.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds