Wall clock time and date at job start Sun Mar 29 2020 22:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48493 * 109.47304 * 270.00872 * 3 2 1 5 5 H 1.48505 * 109.46819 * 30.00949 * 3 2 1 6 6 H 1.48500 * 109.47036 * 150.00409 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47260 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00139 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00129 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00008 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99948 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47224 * 180.02562 * 15 14 12 17 17 C 1.30525 * 124.44870 * 94.97856 * 16 15 14 18 18 C 1.51101 * 111.10317 * 180.26748 * 17 16 15 19 19 C 1.54803 * 104.64610 * 343.19479 * 18 17 16 20 20 C 1.51099 * 124.44623 * 274.99750 * 16 15 14 21 21 H 0.97003 * 119.99714 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46638 * 60.00382 * 9 7 2 23 23 H 1.09000 * 109.47082 * 300.00644 * 9 7 2 24 24 H 1.09004 * 109.47043 * 60.00104 * 10 9 7 25 25 H 1.09000 * 109.47260 * 300.00701 * 10 9 7 26 26 H 0.97000 * 120.00275 * 0.02562 * 11 10 9 27 27 H 0.96994 * 119.99977 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47247 * 60.00117 * 15 14 12 29 29 H 1.08999 * 109.47322 * 300.00266 * 15 14 12 30 30 H 1.08002 * 124.44516 * 359.97438 * 17 16 15 31 31 H 1.08996 * 110.39014 * 102.12741 * 18 17 16 32 32 H 1.08993 * 110.38575 * 224.50514 * 18 17 16 33 33 H 1.09005 * 111.24700 * 266.87567 * 19 18 17 34 34 H 1.08994 * 110.89817 * 142.88949 * 19 18 17 35 35 H 1.08999 * 110.39225 * 315.23024 * 20 16 15 36 36 H 1.09001 * 110.38605 * 77.49232 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0980 -0.0003 13 8 3.4024 -6.0981 -0.0007 14 7 1.5125 -7.2652 -0.0003 15 6 2.2450 -8.5339 -0.0002 16 6 1.2657 -9.6794 -0.0008 17 6 0.8574 -10.3011 -1.0733 18 6 -0.1262 -11.3947 -0.7271 19 6 0.0664 -11.6279 0.7911 20 6 0.6273 -10.2586 1.2402 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6044 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 0.5426 -4.9308 0.0000 27 1 0.5426 -7.2652 -0.0003 28 1 2.8716 -8.5917 0.8899 29 1 2.8717 -8.5918 -0.8901 30 1 1.1767 -10.0619 -2.0770 31 1 -1.1450 -11.0697 -0.9376 32 1 0.1057 -12.3036 -1.2821 33 1 0.7845 -12.4259 0.9802 34 1 -0.8867 -11.8385 1.2761 35 1 1.3729 -10.3923 2.0239 36 1 -0.1782 -9.6127 1.5897 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595579560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:59 Heat of formation + Delta-G solvation = -34.094034 kcal Electronic energy + Delta-G solvation = -16035.334357 eV Core-core repulsion = 13325.946150 eV Total energy + Delta-G solvation = -2709.388208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70220 -38.72268 -35.05067 -34.24585 -32.79496 -30.43918 -29.14688 -28.57637 -25.46472 -24.13108 -21.21213 -20.98723 -20.50069 -18.73133 -17.71271 -16.40229 -16.12382 -15.75048 -15.24092 -15.07888 -14.48467 -13.83454 -13.79464 -13.48257 -13.00102 -12.86948 -12.26281 -12.05743 -11.89967 -11.47957 -11.40019 -11.33762 -11.16110 -11.00844 -10.61123 -10.28725 -9.95436 -9.55533 -9.26291 -9.03250 -8.96882 -8.45892 -8.20326 -6.07230 -4.09692 1.76154 3.28568 3.31305 3.37428 3.42638 3.64052 4.27899 4.31048 4.42278 4.72638 4.78708 4.84829 5.10934 5.28936 5.29905 5.43176 5.48365 5.55122 5.65672 5.73109 5.74810 5.91647 6.28093 6.33797 6.43342 6.58123 6.67387 6.81249 7.04519 7.29558 7.59993 7.66219 7.92294 8.28747 8.48316 8.95450 9.04439 9.54936 11.04495 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060658 B = 0.003399 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.493945 B = 8235.663461 C = 8465.511336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.750 5.750 15 C 0.189 3.811 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.125 4.125 20 C -0.093 4.093 21 H 0.262 0.738 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.393 0.607 27 H 0.394 0.606 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -21.829 0.163 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.397 3.603 13 O -0.478 6.478 14 N -0.406 5.406 15 C 0.065 3.935 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.139 4.139 19 C -0.163 4.163 20 C -0.130 4.130 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.226 0.774 27 H 0.228 0.772 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.704 -21.671 0.182 21.739 hybrid contribution -0.541 0.965 -0.070 1.109 sum -2.245 -20.706 0.112 20.828 Atomic orbital electron populations 1.69961 1.06092 1.26823 1.50523 1.24999 0.94897 0.99406 0.95034 0.86506 0.79848 0.82985 0.78185 1.20570 1.21194 1.19710 1.21064 0.93290 0.90377 1.51168 0.92205 1.19325 0.94265 0.91090 0.97794 1.21585 0.95632 0.80429 1.00633 1.45529 1.09828 1.05306 1.78565 1.16083 0.85636 0.80485 0.78050 1.90887 1.11791 1.86681 1.58486 1.45143 1.09463 1.04315 1.81709 1.19689 0.92017 0.79230 1.02530 1.22093 0.99241 0.97996 0.96070 1.23303 0.97177 0.97276 0.98380 1.21409 0.98719 0.97606 0.96149 1.22477 1.01175 0.97161 0.95453 1.21295 0.99736 0.95779 0.96174 0.92884 0.95983 0.95973 0.92799 0.92807 0.77413 0.77249 0.91227 0.91245 0.85626 0.90430 0.91105 0.91062 0.90944 0.91003 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 11 N -0.74 -13.52 5.56 -65.23 -0.36 -13.88 16 12 C 0.70 12.72 8.57 -86.91 -0.74 11.97 16 13 O -0.60 -13.36 16.34 5.29 0.09 -13.28 16 14 N -0.75 -10.08 5.55 -66.41 -0.37 -10.45 16 15 C 0.19 2.28 6.10 -5.19 -0.03 2.24 16 16 C -0.15 -1.44 5.53 -100.74 -0.56 -2.00 16 17 C -0.14 -1.20 10.58 -35.70 -0.38 -1.58 16 18 C -0.10 -0.70 6.82 -26.74 -0.18 -0.88 16 19 C -0.13 -0.83 7.20 -24.92 -0.18 -1.01 16 20 C -0.09 -0.75 6.76 -26.83 -0.18 -0.93 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.39 6.18 8.49 -40.82 -0.35 5.83 16 27 H 0.39 4.32 8.48 -40.82 -0.35 3.97 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -32.33 307.18 -8.86 -41.19 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.73 Total: 3.19 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.83 Total: -2.33 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.00 Total: -49.95 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.33 -8.86 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.095 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds