Wall clock time and date at job start Sun Mar 29 2020 22:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48493 * 109.47304 * 270.00872 * 3 2 1 5 5 H 1.48505 * 109.46819 * 30.00949 * 3 2 1 6 6 H 1.48500 * 109.47036 * 150.00409 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47212 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47260 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00139 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00129 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00008 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99948 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47224 * 180.02562 * 15 14 12 17 17 C 1.30525 * 124.44870 * 94.97856 * 16 15 14 18 18 C 1.51101 * 111.10317 * 180.26748 * 17 16 15 19 19 C 1.54803 * 104.64610 * 343.19479 * 18 17 16 20 20 C 1.51099 * 124.44623 * 274.99750 * 16 15 14 21 21 H 0.97003 * 119.99714 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46638 * 60.00382 * 9 7 2 23 23 H 1.09000 * 109.47082 * 300.00644 * 9 7 2 24 24 H 1.09004 * 109.47043 * 60.00104 * 10 9 7 25 25 H 1.09000 * 109.47260 * 300.00701 * 10 9 7 26 26 H 0.97000 * 120.00275 * 0.02562 * 11 10 9 27 27 H 0.96994 * 119.99977 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47247 * 60.00117 * 15 14 12 29 29 H 1.08999 * 109.47322 * 300.00266 * 15 14 12 30 30 H 1.08002 * 124.44516 * 359.97438 * 17 16 15 31 31 H 1.08996 * 110.39014 * 102.12741 * 18 17 16 32 32 H 1.08993 * 110.38575 * 224.50514 * 18 17 16 33 33 H 1.09005 * 111.24700 * 266.87567 * 19 18 17 34 34 H 1.08994 * 110.89817 * 142.88949 * 19 18 17 35 35 H 1.08999 * 110.39225 * 315.23024 * 20 16 15 36 36 H 1.09001 * 110.38605 * 77.49232 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0980 -0.0003 13 8 3.4024 -6.0981 -0.0007 14 7 1.5125 -7.2652 -0.0003 15 6 2.2450 -8.5339 -0.0002 16 6 1.2657 -9.6794 -0.0008 17 6 0.8574 -10.3011 -1.0733 18 6 -0.1262 -11.3947 -0.7271 19 6 0.0664 -11.6279 0.7911 20 6 0.6273 -10.2586 1.2402 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6044 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 0.5426 -4.9308 0.0000 27 1 0.5426 -7.2652 -0.0003 28 1 2.8716 -8.5917 0.8899 29 1 2.8717 -8.5918 -0.8901 30 1 1.1767 -10.0619 -2.0770 31 1 -1.1450 -11.0697 -0.9376 32 1 0.1057 -12.3036 -1.2821 33 1 0.7845 -12.4259 0.9802 34 1 -0.8867 -11.8385 1.2761 35 1 1.3729 -10.3923 2.0239 36 1 -0.1782 -9.6127 1.5897 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595579560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:58 Heat of formation + Delta-G solvation = -55.724957 kcal Electronic energy + Delta-G solvation = -16036.272345 eV Core-core repulsion = 13325.946150 eV Total energy + Delta-G solvation = -2710.326195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05007 -39.53876 -36.70862 -35.59298 -34.79679 -31.86379 -30.46384 -29.24535 -26.96322 -25.58356 -22.92552 -22.01424 -21.69733 -19.88379 -18.74655 -18.41453 -17.37234 -16.79350 -16.50740 -16.28044 -16.13842 -15.31423 -15.20552 -14.90004 -14.27491 -14.25320 -13.55334 -13.21043 -12.94971 -12.76763 -12.57998 -12.51865 -12.24109 -12.14050 -12.01365 -11.91196 -11.68998 -11.51244 -11.24427 -10.60269 -10.36110 -9.75391 -9.72265 -8.23626 -6.33906 0.97751 1.42548 1.43120 1.54706 1.99296 2.15237 2.42561 3.11200 3.45382 3.58971 3.67427 4.17945 4.23288 4.42386 4.45649 4.51988 4.53491 4.66415 4.86771 4.88125 4.90378 5.03819 5.04903 5.22230 5.31043 5.39339 5.45654 5.51862 5.59629 5.59926 5.79383 5.90652 6.04552 6.17746 6.79267 7.12128 7.35413 7.58459 8.88375 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060658 B = 0.003399 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.493945 B = 8235.663461 C = 8465.511336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.728 5.728 15 C 0.190 3.810 16 C -0.168 4.168 17 C -0.132 4.132 18 C -0.102 4.102 19 C -0.121 4.121 20 C -0.094 4.094 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.407 0.593 27 H 0.409 0.591 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 -22.664 0.044 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.385 5.385 15 C 0.066 3.934 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.159 4.159 20 C -0.131 4.131 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.242 0.758 27 H 0.245 0.755 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.260 -22.554 0.063 22.667 hybrid contribution -0.415 1.143 -0.062 1.218 sum -2.675 -21.411 0.001 21.577 Atomic orbital electron populations 1.70060 1.07534 1.28001 1.51033 1.25874 0.95812 1.03096 0.94395 0.85434 0.78620 0.78397 0.78534 1.19740 1.20463 1.19079 1.21474 0.93628 0.91921 1.51535 0.92291 1.19125 0.94217 0.91621 0.96369 1.21080 0.94649 0.81106 0.99599 1.45218 1.10379 1.04403 1.78767 1.16197 0.85140 0.81276 0.77748 1.90858 1.13779 1.87361 1.60369 1.45015 1.10217 1.03394 1.79866 1.19729 0.92643 0.79294 1.01697 1.21931 0.99817 0.97756 0.97304 1.23552 0.96424 0.96958 0.98204 1.21465 0.98551 0.97414 0.96425 1.22491 1.01841 0.96267 0.95288 1.21323 0.99644 0.96655 0.95476 0.92530 0.97281 0.97270 0.93857 0.93838 0.75779 0.75476 0.92139 0.92086 0.85406 0.89541 0.89887 0.90656 0.89680 0.91296 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.98 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.16 7.15 5.61 86.38 0.48 7.63 16 11 N -0.73 -26.70 5.56 -478.55 -2.66 -29.36 16 12 C 0.70 25.25 8.57 179.05 1.53 26.78 16 13 O -0.64 -28.88 16.34 -4.00 -0.07 -28.94 16 14 N -0.73 -18.99 5.55 -482.28 -2.68 -21.67 16 15 C 0.19 4.47 6.10 85.63 0.52 4.99 16 16 C -0.17 -2.91 5.53 -15.87 -0.09 -3.00 16 17 C -0.13 -1.98 10.58 26.26 0.28 -1.70 16 18 C -0.10 -1.12 6.82 30.59 0.21 -0.91 16 19 C -0.12 -1.32 7.20 31.77 0.23 -1.09 16 20 C -0.09 -1.36 6.76 30.53 0.21 -1.15 16 21 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 22 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.41 12.53 8.49 -92.71 -0.79 11.74 16 27 H 0.41 8.34 8.48 -92.71 -0.79 7.55 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 30 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.53 307.18 0.63 -67.91 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.50 Total: 17.38 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.22 Total: 3.05 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.05 Total: -105.37 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.07 Total: -28.94 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.53 0.63 -67.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595579560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.182 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds