Wall clock time and date at job start Sun Mar 29 2020 23:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1 6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21583 * 120.00270 * 359.72083 * 12 11 10 14 14 N 1.34775 * 119.99585 * 179.72218 * 12 11 10 15 15 C 1.46507 * 119.99876 * 179.97438 * 14 12 11 16 16 C 1.52997 * 119.29702 * 250.52343 * 15 14 12 17 17 C 1.53003 * 60.37701 * 248.69276 * 16 15 14 18 18 H 1.08999 * 119.74939 * 111.12514 * 17 16 15 19 19 C 1.54258 * 118.20079 * 266.38261 * 17 16 15 20 20 C 1.54895 * 104.19554 * 87.79246 * 19 17 16 21 21 C 1.54263 * 117.40732 * 46.18145 * 15 14 12 22 22 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 24 24 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 25 25 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 26 26 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 27 27 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 28 28 H 0.97000 * 120.00523 * 0.02562 * 14 12 11 29 29 H 1.08994 * 117.46569 * 356.29371 * 16 15 14 30 30 H 1.09007 * 117.45601 * 141.09851 * 16 15 14 31 31 H 1.09003 * 110.49248 * 206.46797 * 19 17 16 32 32 H 1.09000 * 110.49223 * 328.98352 * 19 17 16 33 33 H 1.08998 * 110.75790 * 80.36807 * 20 19 17 34 34 H 1.09002 * 110.75943 * 203.74477 * 20 19 17 35 35 H 1.09011 * 110.48412 * 235.04323 * 21 15 14 36 36 H 1.08995 * 110.49278 * 357.68558 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4028 -6.0979 0.0059 14 7 1.5132 -7.2651 0.0106 15 6 2.2457 -8.5339 0.0161 16 6 2.2348 -9.4101 -1.2381 17 6 1.5076 -9.8839 0.0219 18 1 0.4188 -9.9346 0.0313 19 6 2.2695 -10.7986 1.0030 20 6 2.9998 -9.8146 1.9505 21 6 3.4220 -8.6704 1.0047 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8904 25 1 2.8722 -3.6042 0.8906 26 1 2.8722 -3.6042 -0.8894 27 1 0.5430 -4.9308 0.0000 28 1 0.5432 -7.2652 0.0099 29 1 1.6229 -9.0792 -2.0772 30 1 3.1618 -9.9181 -1.5044 31 1 1.5725 -11.4215 1.5635 32 1 2.9878 -11.4188 0.4668 33 1 2.3206 -9.4399 2.7163 34 1 3.8706 -10.2887 2.4033 35 1 4.3340 -8.9486 0.4765 36 1 3.5674 -7.7411 1.5554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596554747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:13 Heat of formation + Delta-G solvation = -41.168571 kcal Electronic energy + Delta-G solvation = -16574.409374 eV Core-core repulsion = 13864.714391 eV Total energy + Delta-G solvation = -2709.694983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43712 -39.85511 -36.54912 -34.95700 -34.51379 -32.35327 -31.23373 -28.71661 -26.67813 -23.70798 -23.14116 -22.36773 -21.18364 -20.44977 -19.24454 -18.39343 -17.68658 -16.65773 -16.48744 -16.16805 -15.83207 -15.11393 -14.97222 -14.57000 -14.27381 -14.11228 -13.87177 -13.20905 -13.02547 -12.87380 -12.51452 -12.28159 -12.06428 -11.90935 -11.82697 -11.66380 -11.63259 -11.45555 -11.18730 -10.74103 -10.61035 -10.11801 -9.54883 -8.24436 -6.34742 1.41247 1.41931 1.55208 1.69433 2.13795 2.41196 2.68005 3.10408 3.30041 3.53521 3.70635 3.90329 4.25964 4.36586 4.46108 4.51393 4.53199 4.64506 4.66351 4.84806 4.86995 4.89399 5.02746 5.20575 5.24332 5.27752 5.31310 5.46123 5.52206 5.58684 5.69705 5.78958 6.03608 6.17018 6.78564 7.14393 7.34752 7.63267 8.87763 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063711 B = 0.003893 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.378627 B = 7191.414953 C = 7330.282711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.162 3.838 11 N -0.735 5.735 12 C 0.699 3.301 13 O -0.630 6.630 14 N -0.700 5.700 15 C 0.078 3.922 16 C -0.158 4.158 17 C -0.137 4.137 18 H 0.130 0.870 19 C -0.090 4.090 20 C -0.119 4.119 21 C -0.087 4.087 22 H 0.266 0.734 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.406 0.594 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -21.684 1.171 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.038 3.962 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.511 6.511 14 N -0.355 5.355 15 C -0.010 4.010 16 C -0.197 4.197 17 C -0.156 4.156 18 H 0.148 0.852 19 C -0.128 4.128 20 C -0.156 4.156 21 C -0.125 4.125 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.241 0.759 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.284 -21.535 1.192 21.606 hybrid contribution -0.640 1.370 -0.132 1.518 sum 0.644 -20.164 1.060 20.202 Atomic orbital electron populations 1.70063 1.07538 1.27949 1.51096 1.25875 0.95808 1.03105 0.94384 0.85381 0.78955 0.78692 0.77923 1.18986 1.20166 1.20165 1.21493 0.93601 0.91900 1.51445 0.92328 1.19132 0.94224 0.91675 0.96328 1.21053 0.94593 0.81086 0.99487 1.45233 1.10327 1.04413 1.78998 1.16130 0.85282 0.80983 0.77667 1.90848 1.13490 1.87116 1.59623 1.44167 1.09376 1.02497 1.79411 1.21528 0.97453 0.80820 1.01165 1.23653 1.02856 1.01024 0.92121 1.23881 0.99990 0.93310 0.98396 0.85186 1.22010 0.98939 0.96378 0.95459 1.22601 1.00686 0.94885 0.97474 1.21853 0.95827 0.98844 0.95982 0.92529 0.97316 0.97311 0.93949 0.93947 0.75911 0.75346 0.87939 0.87912 0.89000 0.90082 0.91643 0.89789 0.91615 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -30.99 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.16 7.27 5.61 86.38 0.48 7.76 16 11 N -0.73 -26.92 5.56 -478.53 -2.66 -29.58 16 12 C 0.70 25.48 8.27 179.05 1.48 26.96 16 13 O -0.63 -28.05 14.53 -3.98 -0.06 -28.11 16 14 N -0.70 -18.61 5.67 -434.71 -2.46 -21.07 16 15 C 0.08 1.86 2.99 4.32 0.01 1.87 16 16 C -0.16 -3.00 10.06 30.59 0.31 -2.69 16 17 C -0.14 -2.13 6.94 -10.07 -0.07 -2.20 16 18 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.09 -1.17 6.63 31.67 0.21 -0.96 16 20 C -0.12 -2.05 6.88 31.69 0.22 -1.83 16 21 C -0.09 -2.20 5.62 31.47 0.18 -2.02 16 22 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.41 12.59 8.49 -92.71 -0.79 11.81 16 28 H 0.41 8.24 8.84 -92.71 -0.82 7.42 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.57 6.71 -2.39 -0.02 1.55 16 Total: -1.00 -69.36 300.36 0.27 -69.09 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.53 Total: 19.66 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 3.67 Total: -1.63 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -4.84 Total: -105.06 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.36 0.27 -69.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596554747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.921 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds