Wall clock time and date at job start Sun Mar 29 2020 23:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00311 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99947 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00018 * 179.97438 * 14 12 11 16 16 C 1.52997 * 119.29952 * 109.47781 * 15 14 12 17 17 C 1.53005 * 60.37996 * 111.30320 * 16 15 14 18 18 H 1.08999 * 119.75654 * 248.87768 * 17 16 15 19 19 C 1.54262 * 118.19619 * 93.61543 * 17 16 15 20 20 C 1.54890 * 104.19522 * 272.21152 * 19 17 16 21 21 C 1.54260 * 117.41135 * 313.81933 * 15 14 12 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 28 28 H 0.96998 * 119.99887 * 359.97438 * 14 12 11 29 29 H 1.09002 * 117.46317 * 218.90076 * 16 15 14 30 30 H 1.08998 * 117.46042 * 3.70606 * 16 15 14 31 31 H 1.09003 * 110.48818 * 30.89122 * 19 17 16 32 32 H 1.09000 * 110.48614 * 153.53696 * 19 17 16 33 33 H 1.09004 * 110.75815 * 156.25615 * 20 19 17 34 34 H 1.08997 * 110.75998 * 279.44063 * 20 19 17 35 35 H 1.08998 * 110.49052 * 2.31322 * 21 15 14 36 36 H 1.09002 * 110.49130 * 124.95619 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5131 -7.2652 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 6 2.2338 -9.4054 1.2555 17 6 1.5074 -9.8840 -0.0032 18 1 0.4186 -9.9347 -0.0132 19 6 2.2701 -10.8024 -0.9802 20 6 3.0010 -9.8220 -1.9309 21 6 3.4226 -8.6742 -0.9892 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.5430 -4.9308 -0.0011 28 1 0.5431 -7.2652 -0.0025 29 1 3.1605 -9.9123 1.5244 30 1 1.6213 -9.0712 2.0929 31 1 2.9896 -11.4190 -0.4413 32 1 1.5735 -11.4274 -1.5388 33 1 3.8721 -10.2978 -2.3813 34 1 2.3233 -9.4529 -2.7006 35 1 3.5684 -7.7470 -1.5434 36 1 4.3342 -8.9504 -0.4594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596554749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:16 Heat of formation + Delta-G solvation = -19.367692 kcal Electronic energy + Delta-G solvation = -16573.145512 eV Core-core repulsion = 13864.395887 eV Total energy + Delta-G solvation = -2708.749626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31978 -38.63114 -34.77121 -33.56169 -32.71507 -31.39240 -29.42956 -27.79142 -24.71933 -22.77516 -21.61042 -20.81189 -20.25988 -19.34413 -17.84569 -16.67090 -16.28277 -15.34422 -14.84674 -14.65120 -14.48022 -13.68710 -13.52851 -13.37120 -13.10629 -13.00653 -12.26623 -12.00220 -11.23759 -11.16760 -11.13354 -11.04866 -10.97704 -10.77253 -10.63262 -10.28247 -10.05017 -9.76125 -9.49441 -9.23969 -8.74948 -8.45333 -8.20070 -6.07570 -4.10253 2.96155 3.32753 3.36324 3.37001 3.40146 3.72300 4.32723 4.40162 4.51743 4.64041 4.75371 4.98273 5.19940 5.29434 5.29449 5.44654 5.51273 5.66988 5.70529 5.70670 5.90347 6.04213 6.21067 6.24998 6.33427 6.42325 6.77136 6.81643 7.03530 7.26890 7.58776 7.65302 7.91609 8.28006 8.47828 8.94766 9.05068 9.54383 11.04114 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063782 B = 0.003892 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.889456 B = 7192.360105 C = 7331.535998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.701 3.299 13 O -0.590 6.590 14 N -0.719 5.719 15 C 0.122 3.878 16 C -0.158 4.158 17 C -0.169 4.169 18 H 0.111 0.889 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.083 4.083 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.392 0.608 28 H 0.395 0.605 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 -20.287 -1.133 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.401 3.599 13 O -0.468 6.468 14 N -0.373 5.373 15 C 0.033 3.967 16 C -0.197 4.197 17 C -0.188 4.188 18 H 0.129 0.871 19 C -0.132 4.132 20 C -0.163 4.163 21 C -0.121 4.121 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.225 0.775 28 H 0.229 0.771 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.709 -20.081 -1.156 20.187 hybrid contribution -0.732 1.000 0.133 1.246 sum 0.977 -19.082 -1.024 19.134 Atomic orbital electron populations 1.69943 1.06097 1.26958 1.50409 1.24992 0.94891 0.99394 0.95004 0.86567 0.79507 0.82627 0.78797 1.20093 1.21269 1.20101 1.21022 0.93247 0.90380 1.51342 0.92259 1.19321 0.94262 0.91086 0.97776 1.21583 0.95616 0.80361 1.00625 1.45544 1.09822 1.05290 1.78640 1.16012 0.85713 0.80204 0.77939 1.90875 1.11606 1.86460 1.57902 1.44366 1.08622 1.03294 1.81006 1.21203 0.95998 0.80455 0.99033 1.23574 1.02153 1.01882 0.92114 1.23708 0.98987 0.96239 0.99877 0.87112 1.21958 0.98484 0.96771 0.95939 1.22635 1.00029 0.95769 0.97890 1.21886 0.95465 0.99301 0.95493 0.92815 0.95990 0.96006 0.92803 0.92794 0.77476 0.77137 0.88474 0.88293 0.91178 0.91188 0.91098 0.91434 0.89606 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.41 5.56 -65.22 -0.36 -13.77 16 12 C 0.70 12.64 8.27 -86.91 -0.72 11.93 16 13 O -0.59 -12.77 14.53 5.29 0.08 -12.69 16 14 N -0.72 -9.82 5.67 -51.37 -0.29 -10.11 16 15 C 0.12 1.52 2.99 -130.70 -0.39 1.13 16 16 C -0.16 -1.67 10.06 -26.73 -0.27 -1.94 16 17 C -0.17 -1.58 6.94 -89.50 -0.62 -2.20 16 18 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.09 -0.77 6.63 -25.07 -0.17 -0.94 16 20 C -0.13 -1.19 6.88 -25.04 -0.17 -1.36 16 21 C -0.08 -1.06 5.62 -25.37 -0.14 -1.20 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.39 6.12 8.49 -40.82 -0.35 5.78 16 28 H 0.39 4.28 8.84 -40.82 -0.36 3.92 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.34 6.71 -51.93 -0.35 0.99 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 300.35 15.07 4.53 4.53 Total: -1.00 -31.93 300.35 -9.06 -40.99 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.67 Total: 4.82 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.06 Total: -4.69 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.08 Total: -49.46 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.93 -9.06 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596554749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.625 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds