Wall clock time and date at job start Sun Mar 29 2020 23:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00311 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99947 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00018 * 179.97438 * 14 12 11 16 16 C 1.52997 * 119.29952 * 109.47781 * 15 14 12 17 17 C 1.53005 * 60.37996 * 111.30320 * 16 15 14 18 18 H 1.08999 * 119.75654 * 248.87768 * 17 16 15 19 19 C 1.54262 * 118.19619 * 93.61543 * 17 16 15 20 20 C 1.54890 * 104.19522 * 272.21152 * 19 17 16 21 21 C 1.54260 * 117.41135 * 313.81933 * 15 14 12 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 28 28 H 0.96998 * 119.99887 * 359.97438 * 14 12 11 29 29 H 1.09002 * 117.46317 * 218.90076 * 16 15 14 30 30 H 1.08998 * 117.46042 * 3.70606 * 16 15 14 31 31 H 1.09003 * 110.48818 * 30.89122 * 19 17 16 32 32 H 1.09000 * 110.48614 * 153.53696 * 19 17 16 33 33 H 1.09004 * 110.75815 * 156.25615 * 20 19 17 34 34 H 1.08997 * 110.75998 * 279.44063 * 20 19 17 35 35 H 1.08998 * 110.49052 * 2.31322 * 21 15 14 36 36 H 1.09002 * 110.49130 * 124.95619 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.4027 -6.0979 -0.0003 14 7 1.5131 -7.2652 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 6 2.2338 -9.4054 1.2555 17 6 1.5074 -9.8840 -0.0032 18 1 0.4186 -9.9347 -0.0132 19 6 2.2701 -10.8024 -0.9802 20 6 3.0010 -9.8220 -1.9309 21 6 3.4226 -8.6742 -0.9892 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.5430 -4.9308 -0.0011 28 1 0.5431 -7.2652 -0.0025 29 1 3.1605 -9.9123 1.5244 30 1 1.6213 -9.0712 2.0929 31 1 2.9896 -11.4190 -0.4413 32 1 1.5735 -11.4274 -1.5388 33 1 3.8721 -10.2978 -2.3813 34 1 2.3233 -9.4529 -2.7006 35 1 3.5684 -7.7470 -1.5434 36 1 4.3342 -8.9504 -0.4594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596554749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:16 Heat of formation + Delta-G solvation = -41.070061 kcal Electronic energy + Delta-G solvation = -16574.086598 eV Core-core repulsion = 13864.395887 eV Total energy + Delta-G solvation = -2709.690711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43700 -39.85520 -36.54872 -34.95656 -34.51378 -32.35310 -31.23319 -28.71614 -26.67524 -23.70821 -23.14094 -22.36776 -21.18287 -20.45041 -19.24379 -18.38695 -17.68623 -16.65751 -16.49435 -16.16699 -15.82988 -15.11450 -14.97207 -14.56840 -14.26239 -14.11094 -13.87287 -13.22204 -13.01211 -12.85767 -12.53434 -12.26403 -12.06316 -11.91144 -11.82639 -11.66410 -11.62821 -11.48354 -11.19382 -10.74129 -10.59921 -10.11811 -9.54865 -8.24012 -6.34578 1.41877 1.44610 1.52263 1.69363 2.13778 2.41379 2.67973 3.10701 3.30046 3.53520 3.70658 3.90365 4.26082 4.36424 4.46054 4.51453 4.53234 4.64444 4.66369 4.84777 4.86964 4.89441 5.02814 5.20523 5.24333 5.27700 5.31218 5.46130 5.52002 5.58773 5.69753 5.78884 6.03588 6.17084 6.78313 7.14375 7.34784 7.63255 8.87798 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063782 B = 0.003892 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.889456 B = 7192.360105 C = 7331.535998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.735 5.735 12 C 0.699 3.301 13 O -0.630 6.630 14 N -0.700 5.700 15 C 0.078 3.922 16 C -0.158 4.158 17 C -0.137 4.137 18 H 0.130 0.870 19 C -0.090 4.090 20 C -0.119 4.119 21 C -0.086 4.086 22 H 0.266 0.734 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.406 0.594 28 H 0.410 0.590 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 -21.670 -1.126 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.511 6.511 14 N -0.355 5.355 15 C -0.010 4.010 16 C -0.197 4.197 17 C -0.156 4.156 18 H 0.148 0.852 19 C -0.128 4.128 20 C -0.157 4.157 21 C -0.125 4.125 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.241 0.759 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.286 -21.518 -1.150 21.587 hybrid contribution -0.622 1.362 0.132 1.504 sum 0.664 -20.156 -1.018 20.192 Atomic orbital electron populations 1.70048 1.07551 1.28092 1.50937 1.25872 0.95806 1.03098 0.94347 0.85491 0.78304 0.78057 0.79152 1.19314 1.20516 1.19334 1.21442 0.93616 0.91922 1.51701 0.92296 1.19121 0.94214 0.91655 0.96307 1.21053 0.94595 0.81083 0.99489 1.45231 1.10327 1.04415 1.78998 1.16131 0.85283 0.80981 0.77666 1.90847 1.13488 1.87116 1.59620 1.44167 1.09376 1.02493 1.79419 1.21526 0.97445 0.80858 1.01136 1.23653 1.02859 1.01041 0.92100 1.23883 0.99992 0.93270 0.98433 0.85184 1.22013 0.98913 0.96380 0.95473 1.22598 1.00697 0.94890 0.97479 1.21848 0.95821 0.98817 0.96004 0.92513 0.97329 0.97343 0.93941 0.93941 0.75913 0.75348 0.87909 0.87943 0.90086 0.88984 0.89817 0.91644 0.93397 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.13 9.11 25.60 0.23 -30.90 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.27 5.09 29.85 0.15 1.42 16 10 C 0.16 7.27 5.61 86.38 0.48 7.76 16 11 N -0.73 -26.93 5.56 -478.53 -2.66 -29.59 16 12 C 0.70 25.48 8.27 179.05 1.48 26.96 16 13 O -0.63 -28.04 14.53 -3.97 -0.06 -28.10 16 14 N -0.70 -18.62 5.67 -434.71 -2.46 -21.08 16 15 C 0.08 1.86 2.99 4.33 0.01 1.87 16 16 C -0.16 -3.00 10.06 30.59 0.31 -2.69 16 17 C -0.14 -2.13 6.94 -10.07 -0.07 -2.20 16 18 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.09 -1.17 6.63 31.67 0.21 -0.96 16 20 C -0.12 -2.05 6.88 31.69 0.22 -1.83 16 21 C -0.09 -2.20 5.62 31.47 0.18 -2.02 16 22 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.41 12.60 8.49 -92.71 -0.79 11.81 16 28 H 0.41 8.25 8.84 -92.71 -0.82 7.43 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.57 6.71 -2.39 -0.02 1.55 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -69.30 300.35 0.27 -69.03 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.53 Total: 19.91 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 3.67 Total: -1.71 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.84 Total: -105.15 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.30 0.27 -69.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596554749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.959 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds