Wall clock time and date at job start Sun Mar 29 2020 22:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86793 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47643 * 300.00738 * 3 2 1 6 6 H 1.48504 * 109.47119 * 60.00555 * 3 2 1 7 7 C 1.40044 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99982 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00022 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00003 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47429 * 184.64537 * 12 11 9 14 14 C 1.54197 * 110.81041 * 65.20853 * 13 12 11 15 15 C 1.55865 * 102.83847 * 216.61042 * 14 13 12 16 16 C 1.54905 * 101.27302 * 36.35778 * 15 14 13 17 17 N 1.47868 * 110.84376 * 306.20280 * 13 12 11 18 18 C 1.47863 * 108.41994 * 238.34997 * 17 13 12 19 19 C 1.54875 * 104.91488 * 23.81352 * 18 17 13 20 20 C 1.54204 * 110.81955 * 187.28898 * 13 12 11 21 21 H 0.96995 * 120.00845 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00118 * 0.02562 * 11 9 7 23 23 H 1.08998 * 109.47431 * 64.64905 * 12 11 9 24 24 H 1.09004 * 109.47353 * 304.64560 * 12 11 9 25 25 H 1.09003 * 110.67834 * 336.16850 * 14 13 12 26 26 H 1.08998 * 110.67763 * 99.32453 * 14 13 12 27 27 H 1.09000 * 111.70340 * 278.15464 * 15 14 13 28 28 H 1.09001 * 110.65538 * 154.10639 * 15 14 13 29 29 H 1.08995 * 110.39509 * 202.90418 * 16 15 14 30 30 H 1.08997 * 110.48973 * 80.55425 * 16 15 14 31 31 H 1.08997 * 110.35094 * 142.67620 * 18 17 13 32 32 H 1.09001 * 110.35193 * 264.85126 * 18 17 13 33 33 H 1.08998 * 110.98983 * 81.03810 * 19 18 17 34 34 H 1.08995 * 110.99266 * 204.82183 * 19 18 17 35 35 H 1.08998 * 110.70667 * 216.83372 * 20 13 12 36 36 H 1.09010 * 110.70590 * 340.06575 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2124 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9491 -3.6476 -0.0016 12 6 1.2167 -4.9164 -0.0010 13 6 2.2070 -6.0770 0.1144 14 6 2.9301 -6.0468 1.4760 15 6 4.3706 -6.5192 1.1136 16 6 4.5627 -5.8656 -0.2776 17 7 3.2441 -5.9902 -0.9360 18 6 3.2021 -7.2318 -1.7378 19 6 1.7655 -7.7791 -1.5501 20 6 1.4890 -7.4299 -0.0641 21 1 -0.4851 0.8399 0.0004 22 1 2.9191 -3.6476 -0.0020 23 1 0.6529 -5.0109 -0.9291 24 1 0.5300 -4.9392 0.8452 25 1 2.9269 -5.0390 1.8912 26 1 2.4730 -6.7517 2.1703 27 1 4.4338 -7.6053 1.0470 28 1 5.0942 -6.1313 1.8306 29 1 5.3232 -6.4001 -0.8467 30 1 4.8365 -4.8159 -0.1715 31 1 3.3894 -7.0110 -2.7886 32 1 3.9341 -7.9485 -1.3654 33 1 1.0636 -7.2674 -2.2086 34 1 1.7341 -8.8567 -1.7110 35 1 1.9184 -8.1841 0.5954 36 1 0.4187 -7.3248 0.1143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597587702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:46 Heat of formation + Delta-G solvation = -37.946816 kcal Electronic energy + Delta-G solvation = -17655.235565 eV Core-core repulsion = 14945.680288 eV Total energy + Delta-G solvation = -2709.555277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33309 -36.88046 -33.63501 -33.22351 -32.20157 -30.92954 -28.46127 -26.32761 -25.32807 -23.97644 -21.38984 -21.08887 -19.49752 -18.72084 -17.05052 -16.02966 -15.28403 -15.01111 -14.81425 -14.03186 -13.80666 -13.76375 -13.51128 -13.15691 -12.51323 -12.14619 -12.05161 -11.67260 -11.44826 -11.32104 -11.08624 -11.01426 -10.90252 -10.80836 -10.65776 -10.42957 -10.29287 -10.17574 -10.07134 -8.76207 -8.22337 -7.47035 -7.25146 -6.07817 -4.51755 3.18861 3.26705 3.31456 4.05399 4.19547 4.55749 4.59968 4.71271 4.93507 5.03022 5.07072 5.13270 5.26778 5.43206 5.50161 5.58068 5.66181 5.80532 5.85918 5.89232 5.90638 5.94931 6.03321 6.08626 6.21586 6.29671 6.42756 6.52589 6.70086 7.17067 7.17895 7.53635 8.11384 8.31450 8.48877 9.13647 9.74307 10.72552 10.93552 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.006353 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.126143 B = 4406.572892 C = 4709.578880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.586 6.586 11 N -0.754 5.754 12 C 0.163 3.837 13 C 0.081 3.919 14 C -0.132 4.132 15 C -0.152 4.152 16 C 0.035 3.965 17 N -0.501 5.501 18 C 0.037 3.963 19 C -0.131 4.131 20 C -0.129 4.129 21 H 0.266 0.734 22 H 0.381 0.619 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 -14.290 0.314 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.469 6.469 11 N -0.410 5.410 12 C 0.037 3.963 13 C -0.008 4.008 14 C -0.171 4.171 15 C -0.191 4.191 16 C -0.093 4.093 17 N -0.224 5.224 18 C -0.091 4.091 19 C -0.169 4.169 20 C -0.168 4.168 21 H 0.077 0.923 22 H 0.214 0.786 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.304 -13.717 -0.057 15.540 hybrid contribution 1.104 0.043 0.492 1.210 sum 8.408 -13.674 0.435 16.058 Atomic orbital electron populations 1.70040 1.07012 1.26890 1.36060 1.25694 0.94564 1.00170 0.92710 0.86367 0.80526 0.82021 0.78101 1.18840 1.20245 1.20275 1.20921 0.93511 0.89538 1.54194 0.91594 1.18191 0.87139 0.82580 0.76218 1.90583 1.14211 1.87058 1.55083 1.45906 1.08657 1.04362 1.82043 1.20690 0.92369 0.83268 0.99978 1.22667 0.92891 0.95157 0.90123 1.23024 0.94664 1.02655 0.96709 1.23217 0.97543 1.00004 0.98311 1.23266 0.91453 1.01571 0.93027 1.65129 1.02692 1.34473 1.20074 1.23152 0.96378 0.90532 0.99038 1.22715 0.97059 1.00352 0.96747 1.22823 1.01471 0.95947 0.96570 0.92349 0.78649 0.93709 0.93213 0.89702 0.91359 0.91849 0.90903 0.91477 0.89805 0.90494 0.93838 0.90481 0.91242 0.91436 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.83 11.83 55.55 0.66 -23.17 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 3 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 4 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.93 9.54 -35.63 -0.34 -16.27 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.56 16.43 7.75 -12.99 -0.10 16.33 16 10 O -0.59 -19.67 15.02 5.20 0.08 -19.59 16 11 N -0.75 -17.76 4.89 -61.72 -0.30 -18.06 16 12 C 0.16 3.32 4.72 -4.04 -0.02 3.30 16 13 C 0.08 1.23 0.65 -129.81 -0.08 1.14 16 14 C -0.13 -1.81 5.74 -24.58 -0.14 -1.95 16 15 C -0.15 -1.73 7.05 -24.20 -0.17 -1.90 16 16 C 0.04 0.44 6.19 -2.26 -0.01 0.43 16 17 N -0.50 -7.34 4.87 -212.72 -1.04 -8.38 16 18 C 0.04 0.45 6.50 -2.31 -0.01 0.43 16 19 C -0.13 -1.52 7.08 -24.61 -0.17 -1.69 16 20 C -0.13 -1.62 5.95 -24.97 -0.15 -1.77 16 21 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 22 H 0.38 8.20 7.07 -40.82 -0.29 7.92 16 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.08 1.34 7.39 -51.93 -0.38 0.96 16 26 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.73 7.57 -51.93 -0.39 0.34 16 30 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.46 7.53 -51.93 -0.39 0.07 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.74 7.64 -51.93 -0.40 0.35 16 36 H 0.08 0.98 7.85 -51.92 -0.41 0.57 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -34.67 287.69 -8.16 -42.83 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.56 Total: 5.85 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.30 Total: 0.49 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.68 Total: -49.61 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.08 Total: -19.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.67 -8.16 -42.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597587702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.880 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds