Wall clock time and date at job start Sun Mar 29 2020 22:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86793 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47643 * 300.00738 * 3 2 1 6 6 H 1.48504 * 109.47119 * 60.00555 * 3 2 1 7 7 C 1.40044 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99982 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00022 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00003 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47429 * 184.64537 * 12 11 9 14 14 C 1.54197 * 110.81041 * 65.20853 * 13 12 11 15 15 C 1.55865 * 102.83847 * 216.61042 * 14 13 12 16 16 C 1.54905 * 101.27302 * 36.35778 * 15 14 13 17 17 N 1.47868 * 110.84376 * 306.20280 * 13 12 11 18 18 C 1.47863 * 108.41994 * 238.34997 * 17 13 12 19 19 C 1.54875 * 104.91488 * 23.81352 * 18 17 13 20 20 C 1.54204 * 110.81955 * 187.28898 * 13 12 11 21 21 H 0.96995 * 120.00845 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00118 * 0.02562 * 11 9 7 23 23 H 1.08998 * 109.47431 * 64.64905 * 12 11 9 24 24 H 1.09004 * 109.47353 * 304.64560 * 12 11 9 25 25 H 1.09003 * 110.67834 * 336.16850 * 14 13 12 26 26 H 1.08998 * 110.67763 * 99.32453 * 14 13 12 27 27 H 1.09000 * 111.70340 * 278.15464 * 15 14 13 28 28 H 1.09001 * 110.65538 * 154.10639 * 15 14 13 29 29 H 1.08995 * 110.39509 * 202.90418 * 16 15 14 30 30 H 1.08997 * 110.48973 * 80.55425 * 16 15 14 31 31 H 1.08997 * 110.35094 * 142.67620 * 18 17 13 32 32 H 1.09001 * 110.35193 * 264.85126 * 18 17 13 33 33 H 1.08998 * 110.98983 * 81.03810 * 19 18 17 34 34 H 1.08995 * 110.99266 * 204.82183 * 19 18 17 35 35 H 1.08998 * 110.70667 * 216.83372 * 20 13 12 36 36 H 1.09010 * 110.70590 * 340.06575 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2124 6 1 1.8819 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9491 -3.6476 -0.0016 12 6 1.2167 -4.9164 -0.0010 13 6 2.2070 -6.0770 0.1144 14 6 2.9301 -6.0468 1.4760 15 6 4.3706 -6.5192 1.1136 16 6 4.5627 -5.8656 -0.2776 17 7 3.2441 -5.9902 -0.9360 18 6 3.2021 -7.2318 -1.7378 19 6 1.7655 -7.7791 -1.5501 20 6 1.4890 -7.4299 -0.0641 21 1 -0.4851 0.8399 0.0004 22 1 2.9191 -3.6476 -0.0020 23 1 0.6529 -5.0109 -0.9291 24 1 0.5300 -4.9392 0.8452 25 1 2.9269 -5.0390 1.8912 26 1 2.4730 -6.7517 2.1703 27 1 4.4338 -7.6053 1.0470 28 1 5.0942 -6.1313 1.8306 29 1 5.3232 -6.4001 -0.8467 30 1 4.8365 -4.8159 -0.1715 31 1 3.3894 -7.0110 -2.7886 32 1 3.9341 -7.9485 -1.3654 33 1 1.0636 -7.2674 -2.2086 34 1 1.7341 -8.8567 -1.7110 35 1 1.9184 -8.1841 0.5954 36 1 0.4187 -7.3248 0.1143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597587702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:46 Heat of formation + Delta-G solvation = -64.184978 kcal Electronic energy + Delta-G solvation = -17656.373337 eV Core-core repulsion = 14945.680288 eV Total energy + Delta-G solvation = -2710.693049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47435 -39.06675 -35.17544 -34.58474 -34.35602 -32.29526 -29.84736 -28.29267 -26.33147 -25.64547 -22.44379 -22.07466 -21.54532 -20.10616 -18.97688 -17.45550 -17.18540 -16.20528 -16.07915 -15.71972 -15.49837 -15.35485 -14.58918 -14.51057 -14.17365 -13.80608 -13.41602 -13.05811 -12.90687 -12.74736 -12.62891 -12.50389 -12.41438 -12.09482 -11.97939 -11.84376 -11.74274 -11.47547 -11.31419 -10.93455 -9.84435 -9.38345 -9.25178 -8.27287 -6.83257 1.39578 1.40507 1.58388 2.25967 2.49445 2.95861 3.23150 3.55539 3.65165 3.69903 3.95321 4.01426 4.17024 4.20824 4.26643 4.52324 4.57377 4.63856 4.73051 4.81162 4.90493 4.93965 4.96397 5.01501 5.07984 5.14444 5.19002 5.32819 5.34161 5.39314 5.91040 6.04062 6.17015 6.29159 6.40019 6.88338 7.63362 8.53321 8.70760 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.006353 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.126143 B = 4406.572892 C = 4709.578880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.536 3.464 10 O -0.638 6.638 11 N -0.739 5.739 12 C 0.164 3.836 13 C 0.087 3.913 14 C -0.133 4.133 15 C -0.136 4.136 16 C 0.032 3.968 17 N -0.532 5.532 18 C 0.038 3.962 19 C -0.128 4.128 20 C -0.125 4.125 21 H 0.274 0.726 22 H 0.393 0.607 23 H 0.019 0.981 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 -15.237 0.497 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.610 4.610 8 H 0.102 0.898 9 C 0.340 3.660 10 O -0.526 6.526 11 N -0.392 5.392 12 C 0.038 3.962 13 C -0.003 4.003 14 C -0.172 4.172 15 C -0.175 4.175 16 C -0.095 4.095 17 N -0.255 5.255 18 C -0.089 4.089 19 C -0.165 4.165 20 C -0.164 4.164 21 H 0.084 0.916 22 H 0.227 0.773 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.995 -14.719 0.123 17.792 hybrid contribution 0.250 0.294 0.408 0.562 sum 10.245 -14.425 0.531 17.701 Atomic orbital electron populations 1.70207 1.09588 1.28802 1.36846 1.27001 0.95537 1.05002 0.91185 0.84957 0.79304 0.75292 0.78603 1.17016 1.19302 1.19130 1.21436 0.94534 0.90237 1.54771 0.89829 1.18645 0.86801 0.84548 0.76036 1.90531 1.16331 1.88154 1.57600 1.45588 1.09123 1.04255 1.80263 1.20779 0.93526 0.84139 0.97716 1.22458 0.92441 0.93929 0.91488 1.22987 0.96679 1.01639 0.95894 1.23162 0.95666 1.01188 0.97479 1.23298 0.90915 1.01171 0.94155 1.64935 1.03436 1.36660 1.20503 1.23197 0.97154 0.89933 0.98604 1.22718 0.96360 1.01976 0.95489 1.22819 1.00837 0.94803 0.97923 0.91624 0.77342 0.96308 0.95188 0.92637 0.89681 0.89566 0.89709 0.89158 0.91536 0.90684 0.91250 0.92604 0.88205 0.88651 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.51 11.83 21.83 0.26 -52.25 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 42.49 29.56 68.60 2.03 44.51 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.57 -34.23 9.54 24.83 0.24 -33.99 16 8 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 33.15 7.75 86.36 0.67 33.82 16 10 O -0.64 -45.28 15.02 -4.30 -0.06 -45.34 16 11 N -0.74 -36.24 4.89 -467.41 -2.29 -38.53 16 12 C 0.16 7.02 4.72 86.38 0.41 7.43 16 13 C 0.09 2.58 0.65 4.16 0.00 2.59 16 14 C -0.13 -3.47 5.74 31.99 0.18 -3.29 16 15 C -0.14 -2.66 7.05 32.24 0.23 -2.44 16 16 C 0.03 0.74 6.19 86.76 0.54 1.28 16 17 N -0.53 -14.90 4.87 -826.92 -4.03 -18.93 16 18 C 0.04 0.83 6.50 86.76 0.56 1.40 16 19 C -0.13 -2.70 7.08 31.97 0.23 -2.48 16 20 C -0.13 -2.92 5.95 31.73 0.19 -2.73 16 21 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 22 H 0.39 17.35 7.07 -92.71 -0.66 16.69 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.76 7.39 -2.39 -0.02 1.74 16 26 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.64 7.57 -2.39 -0.02 1.63 16 30 H 0.07 1.72 7.68 -2.39 -0.02 1.71 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.17 7.53 -2.39 -0.02 1.15 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.74 7.64 -2.39 -0.02 1.72 16 36 H 0.07 1.71 7.85 -2.38 -0.02 1.69 16 Total: -1.00 -79.10 287.69 0.03 -79.07 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.41 Total: 27.83 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 3.71 Total: 3.64 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -6.06 Total: -109.71 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.06 Total: -45.34 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.10 0.03 -79.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597587702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.886 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds