Wall clock time and date at job start Sun Mar 29 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.54637 * 111.03439 * 287.02076 * 16 15 14 18 18 C 1.51111 * 104.72562 * 217.33108 * 17 16 15 19 19 C 1.30525 * 111.09875 * 16.44205 * 18 17 16 20 20 C 1.51096 * 111.11063 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 23 23 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 24 24 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 25 25 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 26 26 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 27 27 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 28 28 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 29 29 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 30 30 H 1.08998 * 110.91533 * 51.03116 * 16 15 14 31 31 H 1.08997 * 110.39253 * 336.14221 * 17 16 15 32 32 H 1.09004 * 110.38763 * 98.52450 * 17 16 15 33 33 H 1.07994 * 124.44662 * 196.45795 * 18 17 16 34 34 H 1.08000 * 124.44042 * 180.02562 * 19 18 17 35 35 H 1.08996 * 110.38987 * 224.75599 * 20 19 18 36 36 H 1.08998 * 110.39162 * 102.37527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 6 0.5683 -9.8382 1.3872 18 6 0.4310 -11.3284 1.5969 19 6 1.2025 -11.9911 0.7788 20 6 1.9825 -11.0537 -0.1132 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8713 -3.6047 0.8890 25 1 2.8725 -3.6040 -0.8911 26 1 0.5426 -4.9308 -0.0020 27 1 0.5426 -7.2652 -0.0034 28 1 2.8721 -8.5954 -0.8871 29 1 2.8713 -8.5880 0.8928 30 1 0.5116 -9.5798 -0.7856 31 1 1.1930 -9.4012 2.1663 32 1 -0.4132 -9.3644 1.3759 33 1 -0.2203 -11.7850 2.3274 34 1 1.2733 -13.0682 0.7436 35 1 1.9627 -11.4063 -1.1444 36 1 3.0103 -10.9625 0.2381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599024767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:02 Heat of formation + Delta-G solvation = -32.769767 kcal Electronic energy + Delta-G solvation = -16105.890052 eV Core-core repulsion = 13396.559269 eV Total energy + Delta-G solvation = -2709.330783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79274 -38.75978 -35.04706 -34.26696 -32.79913 -30.52497 -29.10431 -28.41954 -25.34553 -24.06007 -21.03885 -20.69652 -20.31585 -19.03056 -17.89614 -16.51049 -16.27923 -16.03516 -15.30598 -14.77687 -14.48755 -13.83417 -13.57755 -13.45494 -12.98350 -12.77140 -12.41481 -12.27457 -11.81654 -11.43291 -11.39057 -11.15471 -11.13307 -11.01404 -10.59784 -10.29618 -9.90288 -9.53372 -9.22381 -9.16948 -8.96661 -8.46581 -8.20609 -6.07683 -4.10039 1.98321 3.08865 3.29833 3.37452 3.43156 3.64288 4.30168 4.32398 4.42567 4.59369 4.78815 4.99272 5.03367 5.29569 5.30466 5.44017 5.49831 5.55054 5.66259 5.72117 5.81974 6.05292 6.24385 6.33465 6.43080 6.59920 6.66047 6.80992 7.04297 7.28406 7.59737 7.65841 7.92009 8.28469 8.48079 8.95406 9.04572 9.54695 11.04092 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.070668 B = 0.003372 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.124018 B = 8302.800389 C = 8555.635030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.753 5.753 15 C 0.151 3.849 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.166 4.166 19 C -0.170 4.170 20 C -0.093 4.093 21 H 0.261 0.739 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.393 0.607 27 H 0.394 0.606 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -21.638 0.939 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.479 6.479 14 N -0.410 5.410 15 C 0.026 3.974 16 C -0.125 4.125 17 C -0.136 4.136 18 C -0.184 4.184 19 C -0.188 4.188 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.226 0.774 27 H 0.227 0.773 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.516 -21.474 0.933 21.501 hybrid contribution -0.624 0.844 0.059 1.051 sum -1.141 -20.630 0.992 20.686 Atomic orbital electron populations 1.69968 1.06091 1.26719 1.50619 1.25000 0.94897 0.99421 0.95047 0.86456 0.80195 0.83330 0.77582 1.19561 1.20959 1.20956 1.21103 0.93323 0.90367 1.51022 0.92157 1.19332 0.94267 0.91112 0.97789 1.21582 0.95625 0.80452 1.00619 1.45530 1.09814 1.05347 1.78576 1.16079 0.85644 0.80521 0.78045 1.90887 1.11817 1.86716 1.58434 1.45113 1.09412 1.04713 1.81759 1.21111 0.93435 0.80635 1.02232 1.22300 0.97806 0.94273 0.98103 1.21505 1.01075 0.94210 0.96841 1.23313 0.99668 0.95819 0.99579 1.23261 0.98180 0.99105 0.98216 1.21331 0.99394 0.92611 0.99723 0.92937 0.95977 0.95982 0.92822 0.92817 0.77427 0.77305 0.91679 0.91695 0.89543 0.90170 0.91018 0.86001 0.85944 0.90849 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.35 5.56 -65.22 -0.36 -13.71 16 12 C 0.70 12.51 8.57 -86.92 -0.74 11.76 16 13 O -0.60 -13.26 16.34 5.28 0.09 -13.17 16 14 N -0.75 -9.66 5.51 -65.23 -0.36 -10.02 16 15 C 0.15 1.69 4.99 -4.04 -0.02 1.67 16 16 C -0.11 -0.88 3.16 -88.91 -0.28 -1.17 16 17 C -0.10 -0.81 6.33 -26.82 -0.17 -0.98 16 18 C -0.17 -1.28 10.78 -35.69 -0.38 -1.67 16 19 C -0.17 -1.27 10.77 -35.70 -0.38 -1.65 16 20 C -0.09 -0.71 6.38 -26.83 -0.17 -0.88 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.39 6.06 8.49 -40.82 -0.35 5.72 16 27 H 0.39 3.95 8.49 -40.82 -0.35 3.61 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.73 7.74 -51.93 -0.40 0.32 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -32.52 305.63 -8.73 -41.25 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.69 Total: 3.13 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.73 Total: -3.03 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.01 Total: -49.29 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.52 -8.73 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.478 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds