Wall clock time and date at job start Sun Mar 29 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.54637 * 111.03439 * 287.02076 * 16 15 14 18 18 C 1.51111 * 104.72562 * 217.33108 * 17 16 15 19 19 C 1.30525 * 111.09875 * 16.44205 * 18 17 16 20 20 C 1.51096 * 111.11063 * 359.97438 * 19 18 17 21 21 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 23 23 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 24 24 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 25 25 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 26 26 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 27 27 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 28 28 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 29 29 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 30 30 H 1.08998 * 110.91533 * 51.03116 * 16 15 14 31 31 H 1.08997 * 110.39253 * 336.14221 * 17 16 15 32 32 H 1.09004 * 110.38763 * 98.52450 * 17 16 15 33 33 H 1.07994 * 124.44662 * 196.45795 * 18 17 16 34 34 H 1.08000 * 124.44042 * 180.02562 * 19 18 17 35 35 H 1.08996 * 110.38987 * 224.75599 * 20 19 18 36 36 H 1.08998 * 110.39162 * 102.37527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 6 1.2508 -9.6968 0.0068 17 6 0.5683 -9.8382 1.3872 18 6 0.4310 -11.3284 1.5969 19 6 1.2025 -11.9911 0.7788 20 6 1.9825 -11.0537 -0.1132 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8713 -3.6047 0.8890 25 1 2.8725 -3.6040 -0.8911 26 1 0.5426 -4.9308 -0.0020 27 1 0.5426 -7.2652 -0.0034 28 1 2.8721 -8.5954 -0.8871 29 1 2.8713 -8.5880 0.8928 30 1 0.5116 -9.5798 -0.7856 31 1 1.1930 -9.4012 2.1663 32 1 -0.4132 -9.3644 1.3759 33 1 -0.2203 -11.7850 2.3274 34 1 1.2733 -13.0682 0.7436 35 1 1.9627 -11.4063 -1.1444 36 1 3.0103 -10.9625 0.2381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599024767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:02 Heat of formation + Delta-G solvation = -54.676983 kcal Electronic energy + Delta-G solvation = -16106.840020 eV Core-core repulsion = 13396.559269 eV Total energy + Delta-G solvation = -2710.280752 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06875 -39.62348 -36.68552 -35.57838 -34.78885 -31.90130 -30.51038 -29.04062 -26.91927 -25.41348 -22.90698 -22.00669 -21.22082 -19.68295 -19.23010 -18.40747 -17.43106 -16.95194 -16.65413 -16.46948 -15.98298 -15.26396 -15.14647 -14.73266 -14.26694 -14.03034 -13.60836 -13.19714 -12.98176 -12.94913 -12.58201 -12.49860 -12.24827 -12.14090 -12.01320 -11.83421 -11.66855 -11.47998 -11.18304 -10.60420 -10.33176 -9.75299 -9.69211 -8.23547 -6.33605 1.41222 1.41822 1.42717 1.55927 1.79095 2.17915 2.42206 3.11364 3.37319 3.64260 3.71235 3.92095 4.35742 4.41108 4.48387 4.52654 4.55982 4.73243 4.85521 4.87640 4.87904 4.92778 5.06090 5.13957 5.31399 5.34863 5.52133 5.54751 5.60584 5.68266 5.80089 6.04100 6.06795 6.18313 6.79845 7.15087 7.35805 7.61450 8.88643 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.070668 B = 0.003372 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.124018 B = 8302.800389 C = 8555.635030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.696 3.304 13 O -0.643 6.643 14 N -0.731 5.731 15 C 0.151 3.849 16 C -0.097 4.097 17 C -0.101 4.101 18 C -0.175 4.175 19 C -0.171 4.171 20 C -0.095 4.095 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.407 0.593 27 H 0.411 0.589 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -22.384 0.838 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.395 3.605 13 O -0.525 6.525 14 N -0.388 5.388 15 C 0.027 3.973 16 C -0.116 4.116 17 C -0.138 4.138 18 C -0.193 4.193 19 C -0.189 4.189 20 C -0.133 4.133 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.243 0.757 27 H 0.247 0.753 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.904 -22.268 0.833 22.302 hybrid contribution -0.542 1.004 0.092 1.145 sum -1.446 -21.264 0.925 21.334 Atomic orbital electron populations 1.70063 1.07516 1.27928 1.51128 1.25869 0.95811 1.03086 0.94433 0.85388 0.78958 0.78745 0.77904 1.19005 1.20194 1.20193 1.21502 0.93608 0.91936 1.51375 0.92338 1.19130 0.94217 0.91621 0.96378 1.21069 0.94635 0.81185 0.99539 1.45211 1.10381 1.04423 1.78797 1.16206 0.85143 0.81358 0.77747 1.90859 1.13870 1.87407 1.60360 1.44952 1.10290 1.03678 1.79849 1.21220 0.94092 0.80637 1.01377 1.22224 0.97303 0.93310 0.98726 1.21512 1.01199 0.94901 0.96211 1.23442 1.00294 0.95416 1.00172 1.23439 0.97702 0.99900 0.97826 1.21367 0.99211 0.92139 1.00559 0.92541 0.97248 0.97266 0.93932 0.93897 0.75747 0.75305 0.92354 0.92815 0.88405 0.91332 0.90213 0.84848 0.84438 0.89758 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.80 9.11 25.60 0.23 -30.56 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 N -0.73 -26.22 5.56 -478.52 -2.66 -28.88 16 12 C 0.70 24.63 8.57 179.05 1.53 26.17 16 13 O -0.64 -28.58 16.34 -4.01 -0.07 -28.65 16 14 N -0.73 -17.87 5.51 -478.54 -2.64 -20.50 16 15 C 0.15 3.25 4.99 86.38 0.43 3.68 16 16 C -0.10 -1.44 3.16 -9.68 -0.03 -1.47 16 17 C -0.10 -1.49 6.33 30.54 0.19 -1.30 16 18 C -0.18 -2.37 10.78 26.27 0.28 -2.08 16 19 C -0.17 -2.19 10.77 26.26 0.28 -1.90 16 20 C -0.10 -1.28 6.38 30.53 0.19 -1.08 16 21 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 22 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.41 12.21 8.49 -92.71 -0.79 11.42 16 27 H 0.41 7.42 8.49 -92.71 -0.79 6.64 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.30 7.92 -2.39 -0.02 1.29 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.18 7.74 -2.39 -0.02 1.16 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.10 7.89 -2.39 -0.02 1.08 16 Total: -1.00 -68.94 305.63 0.66 -68.28 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.50 Total: 16.80 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.22 Total: 1.23 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -5.01 Total: -103.55 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.07 Total: -28.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.94 0.66 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.599 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds