Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46587 * 2 1 4 4 H 1.09003 * 109.47292 * 57.25474 * 3 2 1 5 5 C 1.50707 * 109.47141 * 177.25626 * 3 2 1 6 6 H 1.07999 * 119.99902 * 114.31784 * 5 3 2 7 7 C 1.37872 * 119.99564 * 294.32454 * 5 3 2 8 8 N 1.31511 * 120.00358 * 0.39061 * 7 5 3 9 9 Si 1.86809 * 119.99941 * 180.38947 * 7 5 3 10 10 H 1.48493 * 109.46997 * 265.00750 * 9 7 5 11 11 H 1.48502 * 109.46558 * 25.00663 * 9 7 5 12 12 H 1.48494 * 109.47004 * 145.00380 * 9 7 5 13 13 N 1.46502 * 109.47469 * 297.25519 * 3 2 1 14 14 C 1.30161 * 120.00331 * 127.15481 * 13 3 2 15 15 N 1.37899 * 120.00106 * 6.80651 * 14 13 3 16 16 H 0.96999 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37893 * 119.99984 * 179.74374 * 15 14 13 18 18 N 1.30174 * 120.00107 * 180.25273 * 17 15 14 19 19 N 1.37898 * 120.00382 * 0.53267 * 17 15 14 20 20 H 0.96999 * 120.00168 * 179.74521 * 19 17 15 21 21 C 1.37896 * 119.99569 * 359.72325 * 19 17 15 22 22 N 1.30167 * 120.00089 * 180.02562 * 21 19 17 23 23 N 1.37895 * 120.00026 * 0.02562 * 21 19 17 24 24 H 0.97002 * 120.00095 * 179.97438 * 23 21 19 25 25 H 1.09001 * 109.47031 * 60.00487 * 1 2 3 26 26 H 1.09002 * 109.46399 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47177 * 299.99607 * 1 2 3 28 28 H 1.08995 * 109.47177 * 240.00393 * 2 1 3 29 29 H 1.08992 * 109.47261 * 119.99498 * 2 1 3 30 30 H 0.97008 * 120.00090 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00446 * 180.28024 * 18 17 15 32 32 H 0.96999 * 119.99648 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6369 1.9704 0.8644 5 6 3.5455 1.4432 0.0680 6 1 4.1235 1.8150 -0.7651 7 6 4.1848 0.9691 1.1938 8 7 3.4811 0.5092 2.2051 9 14 6.0507 0.9800 1.2826 10 1 6.5741 -0.3439 0.8601 11 1 6.5829 2.0334 0.3812 12 1 6.4783 1.2594 2.6769 13 7 1.6063 2.1138 -1.2279 14 6 0.9726 3.2487 -1.1602 15 7 0.8321 3.8887 0.0532 16 1 1.2052 3.4930 0.8563 17 6 0.1653 5.0936 0.1240 18 7 0.0369 5.7002 1.2686 19 7 -0.3706 5.6533 -1.0167 20 1 -0.8429 6.4991 -0.9662 21 6 -0.2347 5.0107 -2.2292 22 7 -0.7401 5.5391 -3.3061 23 7 0.4366 3.8083 -2.3009 24 1 0.5319 3.3561 -3.1537 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.9310 0.1760 2.9973 31 1 -0.4356 6.5458 1.3192 32 1 -1.2120 6.3851 -3.2557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599064891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = 95.034100 kcal Electronic energy + Delta-G solvation = -17058.204689 eV Core-core repulsion = 14283.168305 eV Total energy + Delta-G solvation = -2775.036384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.124 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84388 -37.11355 -36.23106 -34.55787 -32.02913 -31.67251 -31.08677 -30.45994 -26.99735 -23.59257 -22.47346 -22.07152 -20.66661 -19.67415 -18.84713 -16.91128 -16.59955 -16.25175 -16.04018 -15.47794 -14.93018 -14.62667 -13.90077 -13.22459 -12.64213 -12.61502 -12.25962 -12.16399 -11.31932 -10.98614 -10.83012 -10.56566 -10.32232 -10.06818 -9.82786 -9.48966 -9.37692 -8.85422 -8.82618 -8.71098 -8.28248 -7.52341 -6.12784 -4.19436 2.14260 2.26027 2.42058 3.04756 3.25068 3.27494 3.33695 3.37884 3.71702 4.36693 5.17222 5.19684 5.35790 5.62862 5.84347 6.16722 6.22991 6.42700 6.46394 6.72321 6.87074 6.88798 6.99062 7.22019 7.27353 7.52073 7.62299 7.73231 7.90569 8.19509 8.34581 8.41634 8.75245 8.99583 9.47777 10.93081 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.007263 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.593023 B = 3854.110224 C = 4094.320307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.512 4.512 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.285 1.285 13 N -0.550 5.550 14 C 0.553 3.447 15 N -0.654 5.654 16 H 0.450 0.550 17 C 0.620 3.380 18 N -0.779 5.779 19 N -0.718 5.718 20 H 0.425 0.575 21 C 0.631 3.369 22 N -0.786 5.786 23 N -0.620 5.620 24 H 0.445 0.555 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.345 0.655 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 7.686 -4.580 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C 0.117 3.883 4 H 0.029 0.971 5 C -0.551 4.551 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.211 1.211 13 N -0.280 5.280 14 C 0.186 3.814 15 N -0.307 5.307 16 H 0.299 0.701 17 C 0.249 3.751 18 N -0.422 5.422 19 N -0.371 5.371 20 H 0.265 0.735 21 C 0.261 3.739 22 N -0.430 5.430 23 N -0.265 5.265 24 H 0.289 0.711 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.053 6.256 -4.947 10.647 hybrid contribution 0.129 1.768 0.940 2.006 sum -6.925 8.024 -4.007 11.331 Atomic orbital electron populations 1.21831 0.99150 0.99543 0.99973 1.21500 0.91684 0.98357 1.02401 1.19140 0.95344 0.90723 0.83097 0.97114 1.21104 0.89932 1.42296 1.01762 0.91892 1.24943 0.98702 0.94913 0.95363 1.69904 1.35376 1.41440 1.05924 0.86450 0.85072 0.78451 0.77309 1.20555 1.19875 1.21123 1.72210 1.15432 1.05825 1.34486 1.18786 0.94041 0.90489 0.78060 1.42862 1.57509 1.18710 1.11628 0.70130 1.19325 0.86717 0.86645 0.82398 1.69716 1.34353 1.18908 1.19198 1.44797 1.59812 1.26201 1.06258 0.73458 1.18999 0.88037 0.85119 0.81779 1.69598 1.28198 1.21769 1.23438 1.40833 1.55906 1.19433 1.10346 0.71127 0.94072 0.94483 0.94216 0.93501 0.89226 0.92630 0.83725 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.78 37.16 0.36 -2.52 16 2 C -0.10 -2.32 5.49 -26.73 -0.15 -2.46 16 3 C 0.22 5.37 2.10 -69.08 -0.15 5.22 16 4 H 0.01 0.28 5.54 -51.93 -0.29 -0.01 16 5 C -0.51 -13.64 8.77 -34.44 -0.30 -13.95 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.69 5.32 -17.82 -0.09 1.59 16 8 N -0.89 -24.14 11.72 55.43 0.65 -23.49 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.55 -11.60 9.55 -56.21 -0.54 -12.14 16 14 C 0.55 10.05 8.51 -319.13 -2.71 7.34 16 15 N -0.65 -11.59 5.32 -13.71 -0.07 -11.66 16 16 H 0.45 8.91 6.27 -40.82 -0.26 8.66 16 17 C 0.62 9.32 8.81 -319.12 -2.81 6.51 16 18 N -0.78 -11.62 14.12 30.29 0.43 -11.20 16 19 N -0.72 -8.39 5.49 -13.71 -0.08 -8.46 16 20 H 0.42 3.44 8.71 -40.82 -0.36 3.08 16 21 C 0.63 8.37 8.81 -319.13 -2.81 5.56 16 22 N -0.79 -9.77 14.12 30.28 0.43 -9.34 16 23 N -0.62 -9.27 5.49 -13.71 -0.08 -9.34 16 24 H 0.45 6.19 8.93 -40.82 -0.36 5.83 16 25 H 0.04 0.78 7.68 -51.93 -0.40 0.38 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 2.27 6.46 -51.93 -0.34 1.93 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.34 4.07 8.80 -40.82 -0.36 3.71 16 32 H 0.35 3.47 8.80 -40.82 -0.36 3.11 16 LS Contribution 275.99 15.07 4.16 4.16 Total: -1.00 -28.44 275.99 -12.31 -40.75 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -3.53 Total: 17.58 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -8.67 Total: 7.27 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: 0.75 Total: -85.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.44 -12.31 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599064891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.786 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds