Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46587 * 2 1 4 4 H 1.09003 * 109.47292 * 57.25474 * 3 2 1 5 5 C 1.50707 * 109.47141 * 177.25626 * 3 2 1 6 6 H 1.07999 * 119.99902 * 114.31784 * 5 3 2 7 7 C 1.37872 * 119.99564 * 294.32454 * 5 3 2 8 8 N 1.31511 * 120.00358 * 0.39061 * 7 5 3 9 9 Si 1.86809 * 119.99941 * 180.38947 * 7 5 3 10 10 H 1.48493 * 109.46997 * 265.00750 * 9 7 5 11 11 H 1.48502 * 109.46558 * 25.00663 * 9 7 5 12 12 H 1.48494 * 109.47004 * 145.00380 * 9 7 5 13 13 N 1.46502 * 109.47469 * 297.25519 * 3 2 1 14 14 C 1.30161 * 120.00331 * 127.15481 * 13 3 2 15 15 N 1.37899 * 120.00106 * 6.80651 * 14 13 3 16 16 H 0.96999 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37893 * 119.99984 * 179.74374 * 15 14 13 18 18 N 1.30174 * 120.00107 * 180.25273 * 17 15 14 19 19 N 1.37898 * 120.00382 * 0.53267 * 17 15 14 20 20 H 0.96999 * 120.00168 * 179.74521 * 19 17 15 21 21 C 1.37896 * 119.99569 * 359.72325 * 19 17 15 22 22 N 1.30167 * 120.00089 * 180.02562 * 21 19 17 23 23 N 1.37895 * 120.00026 * 0.02562 * 21 19 17 24 24 H 0.97002 * 120.00095 * 179.97438 * 23 21 19 25 25 H 1.09001 * 109.47031 * 60.00487 * 1 2 3 26 26 H 1.09002 * 109.46399 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47177 * 299.99607 * 1 2 3 28 28 H 1.08995 * 109.47177 * 240.00393 * 2 1 3 29 29 H 1.08992 * 109.47261 * 119.99498 * 2 1 3 30 30 H 0.97008 * 120.00090 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00446 * 180.28024 * 18 17 15 32 32 H 0.96999 * 119.99648 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6369 1.9704 0.8644 5 6 3.5455 1.4432 0.0680 6 1 4.1235 1.8150 -0.7651 7 6 4.1848 0.9691 1.1938 8 7 3.4811 0.5092 2.2051 9 14 6.0507 0.9800 1.2826 10 1 6.5741 -0.3439 0.8601 11 1 6.5829 2.0334 0.3812 12 1 6.4783 1.2594 2.6769 13 7 1.6063 2.1138 -1.2279 14 6 0.9726 3.2487 -1.1602 15 7 0.8321 3.8887 0.0532 16 1 1.2052 3.4930 0.8563 17 6 0.1653 5.0936 0.1240 18 7 0.0369 5.7002 1.2686 19 7 -0.3706 5.6533 -1.0167 20 1 -0.8429 6.4991 -0.9662 21 6 -0.2347 5.0107 -2.2292 22 7 -0.7401 5.5391 -3.3061 23 7 0.4366 3.8083 -2.3009 24 1 0.5319 3.3561 -3.1537 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.9310 0.1760 2.9973 31 1 -0.4356 6.5458 1.3192 32 1 -1.2120 6.3851 -3.2557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599064891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = 79.948154 kcal Electronic energy + Delta-G solvation = -17058.858865 eV Core-core repulsion = 14283.168305 eV Total energy + Delta-G solvation = -2775.690560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.08156 -38.54023 -37.43427 -36.17615 -33.85342 -32.97996 -32.24624 -31.95142 -28.81808 -25.34447 -23.70190 -23.54416 -21.91928 -21.22934 -20.14638 -18.46265 -18.15850 -17.65610 -17.35159 -16.74096 -16.45478 -16.11934 -15.46464 -14.93341 -14.28047 -13.88051 -13.84016 -13.63200 -13.16655 -12.82612 -12.68329 -12.16827 -11.82773 -11.67153 -11.60243 -11.26681 -10.68336 -10.48568 -10.09931 -10.02545 -9.90982 -9.01635 -8.12198 -6.26040 1.00192 1.07509 1.09459 1.41803 1.43903 1.53444 1.83264 2.02159 2.37535 2.48930 3.15080 3.97645 4.18593 4.35770 4.52933 4.60669 4.69266 4.77931 4.98472 5.24300 5.27801 5.43940 5.56733 5.62533 5.72322 5.77450 5.95098 6.18760 6.31822 6.39959 6.80021 7.19213 7.29775 7.40736 7.54459 8.91092 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.026569 B = 0.007263 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.593023 B = 3854.110224 C = 4094.320307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C 0.232 3.768 4 H -0.003 1.003 5 C -0.529 4.529 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.280 1.280 13 N -0.583 5.583 14 C 0.573 3.427 15 N -0.666 5.666 16 H 0.440 0.560 17 C 0.617 3.383 18 N -0.788 5.788 19 N -0.698 5.698 20 H 0.443 0.557 21 C 0.625 3.375 22 N -0.776 5.776 23 N -0.616 5.616 24 H 0.450 0.550 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.265 0.735 31 H 0.362 0.638 32 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 9.004 -5.277 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C 0.123 3.877 4 H 0.014 0.986 5 C -0.568 4.568 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.206 1.206 13 N -0.315 5.315 14 C 0.206 3.794 15 N -0.316 5.316 16 H 0.285 0.715 17 C 0.245 3.755 18 N -0.433 5.433 19 N -0.353 5.353 20 H 0.288 0.712 21 C 0.254 3.746 22 N -0.421 5.421 23 N -0.262 5.262 24 H 0.294 0.706 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.966 7.674 -5.681 12.434 hybrid contribution 0.295 1.510 1.104 1.893 sum -7.670 9.183 -4.577 12.811 Atomic orbital electron populations 1.21665 0.96448 1.00873 1.00067 1.21348 0.94078 0.97734 1.00424 1.18853 0.93754 0.91230 0.83858 0.98605 1.21352 0.91874 1.42238 1.01328 0.93543 1.25591 1.02366 0.94692 0.95148 1.69998 1.36646 1.41962 1.06220 0.85596 0.80707 0.78362 0.77275 1.20097 1.20018 1.20578 1.72126 1.18769 1.07792 1.32767 1.18887 0.92094 0.89556 0.78890 1.42849 1.58003 1.19790 1.10980 0.71457 1.19182 0.86831 0.85978 0.83469 1.69652 1.34248 1.19831 1.19583 1.44582 1.59338 1.26600 1.04758 0.71231 1.18945 0.88436 0.84817 0.82389 1.69561 1.27169 1.22407 1.22998 1.40772 1.55797 1.20106 1.09476 0.70557 0.93417 0.92511 0.94505 0.94503 0.91975 0.92590 0.81773 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.78 71.98 0.70 -4.44 16 2 C -0.10 -4.55 5.49 30.60 0.17 -4.38 16 3 C 0.23 11.31 2.10 44.25 0.09 11.41 16 4 H 0.00 -0.18 5.54 -2.39 -0.01 -0.19 16 5 C -0.53 -28.86 8.77 25.60 0.22 -28.64 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 7 C 0.02 1.21 5.32 84.65 0.45 1.66 16 8 N -0.91 -50.34 11.72 21.44 0.25 -50.08 16 9 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 N -0.58 -24.78 9.55 -331.74 -3.17 -27.94 16 14 C 0.57 20.50 8.51 260.20 2.21 22.71 16 15 N -0.67 -23.25 5.32 -197.28 -1.05 -24.30 16 16 H 0.44 17.63 6.27 -92.71 -0.58 17.05 16 17 C 0.62 17.50 8.81 260.20 2.29 19.79 16 18 N -0.79 -22.16 14.12 -58.09 -0.82 -22.98 16 19 N -0.70 -14.47 5.49 -197.28 -1.08 -15.55 16 20 H 0.44 5.71 8.71 -92.71 -0.81 4.90 16 21 C 0.62 14.97 8.81 260.20 2.29 17.26 16 22 N -0.78 -16.87 14.12 -58.10 -0.82 -17.69 16 23 N -0.62 -17.44 5.49 -197.29 -1.08 -18.52 16 24 H 0.45 11.84 8.93 -92.71 -0.83 11.01 16 25 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 3.23 6.46 -2.39 -0.02 3.21 16 30 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.36 7.69 8.80 -92.71 -0.82 6.88 16 32 H 0.36 5.95 8.80 -92.71 -0.82 5.13 16 Total: -1.00 -60.80 275.99 0.07 -60.73 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -2.63 Total: 35.66 kcal Atomic # 6 Polarization: 26.92 SS G_CDS: 8.44 Total: 35.36 kcal Atomic # 7 Polarization: -169.29 SS G_CDS: -7.77 Total: -177.06 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.80 0.07 -60.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599064891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.679 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds