Wall clock time and date at job start Sun Mar 29 2020 22:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48497 * 109.46813 * 239.99960 * 3 2 1 5 5 H 1.48496 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46975 * 120.00213 * 3 2 1 7 7 C 1.38947 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99870 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99730 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00207 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99643 * 180.27602 * 10 9 7 13 13 H 1.08998 * 112.74948 * 50.05346 * 12 10 9 14 14 C 1.53517 * 113.47308 * 279.28079 * 12 10 9 15 15 C 1.53632 * 83.53170 * 219.22891 * 14 12 10 16 16 N 1.47480 * 87.95409 * 25.98092 * 15 14 12 17 17 C 1.46905 * 110.99718 * 221.34652 * 16 15 14 18 18 C 1.54262 * 110.03284 * 283.43814 * 17 16 15 19 19 C 1.54889 * 104.19831 * 217.10513 * 18 17 16 20 20 C 1.54890 * 102.74661 * 37.93854 * 19 18 17 21 21 C 1.53870 * 110.03012 * 166.27078 * 17 16 15 22 22 H 0.97006 * 120.00192 * 0.02562 * 1 2 3 23 23 H 0.97003 * 120.00360 * 359.97438 * 9 7 2 24 24 H 1.08997 * 114.17199 * 332.85693 * 14 12 10 25 25 H 1.09002 * 114.16612 * 105.56606 * 14 12 10 26 26 H 1.08996 * 113.42314 * 271.20734 * 15 14 12 27 27 H 1.09003 * 113.56708 * 140.76968 * 15 14 12 28 28 H 1.09005 * 110.01465 * 44.88077 * 17 16 15 29 29 H 1.09000 * 110.48827 * 335.78702 * 18 17 16 30 30 H 1.09002 * 110.48785 * 98.42801 * 18 17 16 31 31 H 1.09005 * 110.75532 * 279.63040 * 19 18 17 32 32 H 1.08991 * 110.75919 * 156.25297 * 19 18 17 33 33 H 1.08995 * 110.48886 * 203.37987 * 20 19 18 34 34 H 1.09003 * 110.59620 * 80.79130 * 20 19 18 35 35 H 1.09007 * 110.03304 * 238.56896 * 21 17 16 36 36 H 1.08993 * 110.03506 * 359.94978 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 -0.0047 13 1 0.4780 -4.9037 -0.7792 14 6 0.7345 -5.2816 1.3817 15 6 1.1421 -6.6875 0.9151 16 7 2.1214 -6.0480 0.0168 17 6 2.1440 -6.7102 -1.2943 18 6 2.9134 -8.0439 -1.1995 19 6 3.6754 -8.1393 -2.5447 20 6 4.1017 -6.6724 -2.8007 21 6 2.8995 -5.8382 -2.3123 22 1 -0.4851 0.8401 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 1.3287 -4.8967 2.2104 25 1 -0.3385 -5.1506 1.5212 26 1 0.3484 -7.2157 0.3868 27 1 1.6008 -7.2908 1.6986 28 1 1.1256 -6.8895 -1.6393 29 1 3.6141 -8.0216 -0.3649 30 1 2.2196 -8.8779 -1.0941 31 1 3.0167 -8.4940 -3.3374 32 1 4.5487 -8.7843 -2.4490 33 1 4.2752 -6.5055 -3.8637 34 1 4.9949 -6.4268 -2.2262 35 1 2.2482 -5.5950 -3.1518 36 1 3.2487 -4.9233 -1.8338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:52 Heat of formation + Delta-G solvation = -32.889611 kcal Electronic energy + Delta-G solvation = -17440.042696 eV Core-core repulsion = 14730.706716 eV Total energy + Delta-G solvation = -2709.335980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73956 -39.31085 -37.79904 -35.89708 -33.23516 -30.97830 -29.77067 -28.32344 -26.50451 -26.11783 -22.13135 -21.47006 -20.92551 -20.43466 -19.77223 -17.96541 -17.56435 -16.72370 -16.41270 -15.97529 -15.28027 -15.19263 -15.09879 -14.57811 -14.22661 -13.67075 -13.51939 -13.42946 -12.96027 -12.78174 -12.44021 -12.21099 -12.14225 -11.96819 -11.92103 -11.75521 -11.62739 -11.51577 -11.47451 -11.35840 -10.24878 -9.99107 -9.64232 -8.45812 -5.94510 1.38843 1.40201 1.51314 2.05201 2.28842 2.82710 3.18873 3.41141 3.52976 3.71433 3.74527 3.91515 4.07570 4.25201 4.36050 4.44258 4.46069 4.56435 4.58560 4.71671 4.82239 4.85304 4.91590 5.05309 5.06470 5.11588 5.13456 5.21412 5.38527 5.41520 5.48647 5.52038 6.00796 6.27777 6.62545 7.14284 7.58753 8.15947 8.71495 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.006246 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.331446 B = 4482.052281 C = 5007.358628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.573 5.573 10 C 0.455 3.545 11 O -0.616 6.616 12 C 0.017 3.983 13 H 0.100 0.900 14 C -0.126 4.126 15 C 0.010 3.990 16 N -0.462 5.462 17 C 0.045 3.955 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.135 4.135 22 H 0.278 0.722 23 H 0.395 0.605 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -15.004 -2.478 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.210 5.210 10 C 0.242 3.758 11 O -0.502 6.502 12 C -0.096 4.096 13 H 0.117 0.883 14 C -0.164 4.164 15 C -0.118 4.118 16 N -0.186 5.186 17 C -0.063 4.063 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.173 4.173 22 H 0.087 0.913 23 H 0.228 0.772 24 H 0.093 0.907 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.228 -14.804 -2.323 14.987 hybrid contribution -0.783 1.257 -0.351 1.522 sum -1.011 -13.547 -2.674 13.845 Atomic orbital electron populations 1.69664 1.06762 1.29302 1.50384 1.25999 0.96540 1.02247 0.96312 0.85020 0.77811 0.76806 0.78874 1.19861 1.19244 1.19775 1.19598 0.92559 0.84130 1.50056 0.90669 1.41896 1.09164 1.04573 1.65351 1.20514 0.87997 0.85502 0.81795 1.90471 1.15853 1.87775 1.56099 1.23245 0.94648 0.90885 1.00817 0.88273 1.23118 1.02451 0.96610 0.94246 1.23802 0.94758 0.95864 0.97359 1.69007 1.36731 1.02631 1.10207 1.22978 0.98705 0.95106 0.89559 1.22320 0.99015 0.94751 0.98320 1.22447 1.00337 0.95264 0.96956 1.22263 0.96823 0.95964 1.00554 1.22288 0.97950 0.99364 0.97688 0.91293 0.77161 0.90721 0.87671 0.88740 0.88452 0.92146 0.91983 0.89582 0.89994 0.90230 0.91018 0.93387 0.92292 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.45 13.05 21.66 0.28 -50.16 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -30.53 5.29 -306.99 -1.62 -32.15 16 10 C 0.45 22.83 6.80 87.66 0.60 23.42 16 11 O -0.62 -36.17 14.78 -3.05 -0.05 -36.22 16 12 C 0.02 0.63 3.01 41.44 0.12 0.75 16 13 H 0.10 3.29 7.80 -2.39 -0.02 3.27 16 14 C -0.13 -3.75 8.01 30.98 0.25 -3.50 16 15 C 0.01 0.25 7.42 83.61 0.62 0.87 16 16 N -0.46 -15.61 5.43 -876.49 -4.76 -20.37 16 17 C 0.05 1.30 2.24 45.64 0.10 1.41 16 18 C -0.11 -2.44 6.22 31.67 0.20 -2.24 16 19 C -0.11 -2.33 6.91 31.89 0.22 -2.11 16 20 C -0.12 -3.27 6.83 31.67 0.22 -3.05 16 21 C -0.13 -4.54 6.20 31.32 0.19 -4.34 16 22 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 23 H 0.39 19.99 7.90 -92.71 -0.73 19.25 16 24 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 25 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.09 1.79 7.70 -2.39 -0.02 1.77 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.52 7.61 -2.38 -0.02 1.50 16 29 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 2.11 5.56 -2.39 -0.01 2.10 16 Total: -1.00 -69.43 291.57 0.02 -69.42 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.33 Total: 31.26 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 3.80 Total: -7.68 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.10 Total: -102.68 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.05 Total: -36.22 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.43 0.02 -69.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.526 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds