Wall clock time and date at job start Sun Mar 29 2020 22:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48494 * 109.47316 * 269.99839 * 3 2 1 5 5 H 1.48498 * 109.47086 * 30.00379 * 3 2 1 6 6 H 1.48507 * 109.46655 * 149.99952 * 3 2 1 7 7 C 1.38942 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00233 * 359.97438 * 7 2 1 9 9 N 1.37105 * 120.00140 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99631 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00657 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99409 * 179.97438 * 10 9 7 13 13 H 1.09005 * 113.03814 * 350.96421 * 12 10 9 14 14 C 1.53942 * 113.75945 * 122.68051 * 12 10 9 15 15 C 1.53932 * 86.33919 * 90.59665 * 14 12 10 16 16 N 1.47955 * 113.76268 * 219.23963 * 12 10 9 17 17 C 1.46901 * 110.99821 * 23.26705 * 16 12 10 18 18 C 1.54272 * 110.03416 * 184.32392 * 17 16 12 19 19 C 1.54969 * 104.15874 * 217.13487 * 18 17 16 20 20 C 1.54894 * 102.77637 * 37.88996 * 19 18 17 21 21 C 1.53873 * 110.03394 * 67.10835 * 17 16 12 22 22 H 0.96993 * 120.00464 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99931 * 359.97438 * 9 7 2 24 24 H 1.09003 * 113.72916 * 336.23857 * 14 12 10 25 25 H 1.08998 * 113.73433 * 204.95682 * 14 12 10 26 26 H 1.09005 * 113.75706 * 138.04266 * 15 14 12 27 27 H 1.09002 * 113.76308 * 269.29290 * 15 14 12 28 28 H 1.09007 * 110.01799 * 305.71465 * 17 16 12 29 29 H 1.08995 * 110.48421 * 335.78067 * 18 17 16 30 30 H 1.08995 * 110.48315 * 98.42807 * 18 17 16 31 31 H 1.08991 * 110.72145 * 279.57663 * 19 18 17 32 32 H 1.08999 * 110.75988 * 156.21988 * 19 18 17 33 33 H 1.08998 * 110.48566 * 203.40549 * 20 19 18 34 34 H 1.09000 * 110.48820 * 80.75733 * 20 19 18 35 35 H 1.09007 * 110.03190 * 238.57498 * 21 17 16 36 36 H 1.09006 * 110.03004 * 359.94776 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0031 12 6 5.5608 -2.3703 -0.0033 13 1 5.9872 -1.3796 -0.1607 14 6 6.1820 -3.1316 1.1818 15 6 6.1564 -4.3721 0.2707 16 7 6.1564 -3.4187 -0.8608 17 6 5.2146 -3.8419 -1.9057 18 6 5.8151 -5.0083 -2.7175 19 6 5.3481 -4.7389 -4.1704 20 6 5.4413 -3.1966 -4.2798 21 6 4.9766 -2.6907 -2.8986 22 1 -0.4850 0.8399 0.0004 23 1 3.8649 -0.3632 -0.0014 24 1 5.5235 -3.2091 2.0470 25 1 7.1869 -2.7973 1.4397 26 1 7.0586 -4.9808 0.3322 27 1 5.2414 -4.9587 0.3530 28 1 4.2702 -4.1478 -1.4553 29 1 6.9033 -4.9939 -2.6580 30 1 5.4251 -5.9616 -2.3612 31 1 4.3212 -5.0749 -4.3139 32 1 6.0162 -5.2180 -4.8861 33 1 4.7788 -2.8291 -5.0634 34 1 6.4691 -2.8893 -4.4726 35 1 3.9166 -2.4383 -2.9305 36 1 5.5592 -1.8176 -2.6045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:56 Heat of formation + Delta-G solvation = -1.377741 kcal Electronic energy + Delta-G solvation = -17895.604799 eV Core-core repulsion = 15187.635276 eV Total energy + Delta-G solvation = -2707.969523 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63895 -37.42347 -36.42262 -34.01794 -31.77128 -29.62244 -28.57896 -26.84838 -25.10054 -24.28921 -20.78250 -20.32980 -19.69172 -19.18392 -17.69247 -16.30378 -16.08948 -15.27309 -14.88031 -14.62165 -14.28355 -13.62209 -13.35365 -13.01312 -12.83574 -12.46364 -12.12439 -11.99942 -11.50542 -11.26334 -10.84724 -10.80163 -10.69428 -10.66091 -10.36085 -10.27640 -10.24199 -10.18811 -10.03963 -9.54073 -9.35007 -8.27449 -7.76917 -6.39857 -3.90600 2.98076 3.03132 3.11421 3.45152 4.03776 4.38874 4.48170 4.83858 4.96631 5.00172 5.13489 5.25104 5.35389 5.68079 5.71016 5.75994 5.80224 5.89648 5.92331 5.95980 6.04542 6.07889 6.10804 6.13940 6.28639 6.34714 6.44027 6.50552 6.61628 6.78282 6.87037 7.47592 7.49891 8.06221 8.49325 8.85279 9.33598 9.71973 10.72610 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025889 B = 0.008240 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.290791 B = 3397.303814 C = 3861.940768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.877 3.123 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.575 5.575 10 C 0.445 3.555 11 O -0.573 6.573 12 C 0.013 3.987 13 H 0.095 0.905 14 C -0.129 4.129 15 C 0.005 3.995 16 N -0.453 5.453 17 C 0.013 3.987 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.115 4.115 22 H 0.275 0.725 23 H 0.372 0.628 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.771 -3.592 -3.318 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.703 3.297 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.211 5.211 10 C 0.231 3.769 11 O -0.458 6.458 12 C -0.100 4.100 13 H 0.113 0.887 14 C -0.167 4.167 15 C -0.124 4.124 16 N -0.176 5.176 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.085 0.915 23 H 0.205 0.795 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.733 -4.023 -3.698 13.856 hybrid contribution -0.246 1.358 0.309 1.414 sum 12.488 -2.665 -3.389 13.211 Atomic orbital electron populations 1.69617 1.05696 1.27718 1.48432 1.25056 0.95495 0.98077 0.97272 0.86700 0.79918 0.83959 0.79104 1.19438 1.20008 1.19319 1.19450 0.79213 0.96658 1.48254 0.86207 1.42286 1.07589 1.06304 1.64964 1.19734 0.87890 0.84531 0.84732 1.90419 1.69579 1.30737 1.55031 1.23209 0.92891 0.98507 0.95375 0.88666 1.23191 1.00837 0.96003 0.96687 1.23841 1.02021 0.95551 0.90994 1.68938 1.38367 1.05182 1.05132 1.23477 0.97986 0.94978 0.93078 1.22318 1.00532 0.97415 0.94559 1.22456 1.00930 0.96149 0.96482 1.22287 1.00637 0.95492 0.97203 1.22105 1.01417 0.97864 0.93918 0.91458 0.79499 0.90794 0.89324 0.90385 0.89815 0.87522 0.91441 0.92397 0.91656 0.92100 0.92178 0.92035 0.91452 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.18 27.74 -169.99 -4.71 14.47 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.57 -13.53 5.09 -10.96 -0.06 -13.58 16 10 C 0.45 9.90 5.62 -10.98 -0.06 9.84 16 11 O -0.57 -14.55 12.40 5.55 0.07 -14.48 16 12 C 0.01 0.23 3.96 -67.81 -0.27 -0.04 16 13 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 14 C -0.13 -1.95 7.86 -25.80 -0.20 -2.15 16 15 C 0.00 0.07 7.28 -2.77 -0.02 0.05 16 16 N -0.45 -7.60 5.86 -222.78 -1.31 -8.91 16 17 C 0.01 0.23 1.87 -66.59 -0.12 0.11 16 18 C -0.11 -1.63 6.22 -25.03 -0.16 -1.78 16 19 C -0.12 -1.65 6.91 -24.69 -0.17 -1.82 16 20 C -0.12 -1.68 6.83 -25.07 -0.17 -1.85 16 21 C -0.12 -1.99 5.54 -25.62 -0.14 -2.13 16 22 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.37 7.86 5.73 -40.82 -0.23 7.62 16 24 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.48 6.82 -51.93 -0.35 1.13 16 28 H 0.11 2.29 4.63 -51.93 -0.24 2.05 16 29 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 36 H 0.06 1.08 7.49 -51.93 -0.39 0.70 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -29.60 283.28 -7.94 -37.54 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.41 Total: 12.37 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.57 Total: -7.30 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.59 Total: -46.86 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.60 -7.94 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.162 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds