Wall clock time and date at job start Sun Mar 29 2020 22:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99552 * 2 1 4 4 H 1.48494 * 109.47316 * 269.99839 * 3 2 1 5 5 H 1.48498 * 109.47086 * 30.00379 * 3 2 1 6 6 H 1.48507 * 109.46655 * 149.99952 * 3 2 1 7 7 C 1.38942 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00233 * 359.97438 * 7 2 1 9 9 N 1.37105 * 120.00140 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99631 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00657 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99409 * 179.97438 * 10 9 7 13 13 H 1.09005 * 113.03814 * 350.96421 * 12 10 9 14 14 C 1.53942 * 113.75945 * 122.68051 * 12 10 9 15 15 C 1.53932 * 86.33919 * 90.59665 * 14 12 10 16 16 N 1.47955 * 113.76268 * 219.23963 * 12 10 9 17 17 C 1.46901 * 110.99821 * 23.26705 * 16 12 10 18 18 C 1.54272 * 110.03416 * 184.32392 * 17 16 12 19 19 C 1.54969 * 104.15874 * 217.13487 * 18 17 16 20 20 C 1.54894 * 102.77637 * 37.88996 * 19 18 17 21 21 C 1.53873 * 110.03394 * 67.10835 * 17 16 12 22 22 H 0.96993 * 120.00464 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99931 * 359.97438 * 9 7 2 24 24 H 1.09003 * 113.72916 * 336.23857 * 14 12 10 25 25 H 1.08998 * 113.73433 * 204.95682 * 14 12 10 26 26 H 1.09005 * 113.75706 * 138.04266 * 15 14 12 27 27 H 1.09002 * 113.76308 * 269.29290 * 15 14 12 28 28 H 1.09007 * 110.01799 * 305.71465 * 17 16 12 29 29 H 1.08995 * 110.48421 * 335.78067 * 18 17 16 30 30 H 1.08995 * 110.48315 * 98.42807 * 18 17 16 31 31 H 1.08991 * 110.72145 * 279.57663 * 19 18 17 32 32 H 1.08999 * 110.75988 * 156.21988 * 19 18 17 33 33 H 1.08998 * 110.48566 * 203.40549 * 20 19 18 34 34 H 1.09000 * 110.48820 * 80.75733 * 20 19 18 35 35 H 1.09007 * 110.03190 * 238.57498 * 21 17 16 36 36 H 1.09006 * 110.03004 * 359.94776 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0031 12 6 5.5608 -2.3703 -0.0033 13 1 5.9872 -1.3796 -0.1607 14 6 6.1820 -3.1316 1.1818 15 6 6.1564 -4.3721 0.2707 16 7 6.1564 -3.4187 -0.8608 17 6 5.2146 -3.8419 -1.9057 18 6 5.8151 -5.0083 -2.7175 19 6 5.3481 -4.7389 -4.1704 20 6 5.4413 -3.1966 -4.2798 21 6 4.9766 -2.6907 -2.8986 22 1 -0.4850 0.8399 0.0004 23 1 3.8649 -0.3632 -0.0014 24 1 5.5235 -3.2091 2.0470 25 1 7.1869 -2.7973 1.4397 26 1 7.0586 -4.9808 0.3322 27 1 5.2414 -4.9587 0.3530 28 1 4.2702 -4.1478 -1.4553 29 1 6.9033 -4.9939 -2.6580 30 1 5.4251 -5.9616 -2.3612 31 1 4.3212 -5.0749 -4.3139 32 1 6.0162 -5.2180 -4.8861 33 1 4.7788 -2.8291 -5.0634 34 1 6.4691 -2.8893 -4.4726 35 1 3.9166 -2.4383 -2.9305 36 1 5.5592 -1.8176 -2.6045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:56 Heat of formation + Delta-G solvation = -23.521777 kcal Electronic energy + Delta-G solvation = -17896.565036 eV Core-core repulsion = 15187.635276 eV Total energy + Delta-G solvation = -2708.929760 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14330 -39.09557 -37.75957 -36.01264 -33.82746 -30.89736 -29.87982 -28.48146 -26.36856 -26.07889 -22.40704 -21.49560 -21.12597 -21.02530 -19.47560 -17.92505 -17.47284 -16.85557 -16.49023 -16.08578 -15.84255 -15.20111 -14.85083 -14.63952 -14.29016 -14.16315 -13.88338 -13.35040 -13.00074 -12.71803 -12.47921 -12.10174 -12.05209 -11.99544 -11.90612 -11.77153 -11.60078 -11.57413 -11.46301 -11.29911 -10.99239 -10.28610 -9.40172 -8.47235 -6.07347 1.26149 1.29636 1.39766 1.73690 2.17623 2.76458 2.96335 3.16833 3.52759 3.71789 3.77011 3.90372 4.04078 4.21514 4.41781 4.45123 4.53491 4.57733 4.74472 4.75698 4.77853 4.85168 4.89958 5.00355 5.04584 5.07746 5.17107 5.25229 5.34685 5.45871 5.48678 5.51991 5.89326 6.08629 6.50648 6.80347 7.31435 7.85601 8.69915 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025889 B = 0.008240 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.290791 B = 3397.303814 C = 3861.940768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.327 4.327 8 H 0.057 0.943 9 N -0.579 5.579 10 C 0.450 3.550 11 O -0.609 6.609 12 C 0.006 3.994 13 H 0.124 0.876 14 C -0.114 4.114 15 C 0.003 3.997 16 N -0.438 5.438 17 C 0.011 3.989 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.116 4.116 22 H 0.280 0.720 23 H 0.388 0.612 24 H 0.062 0.938 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.815 -2.369 -3.764 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.209 4.209 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.456 4.456 8 H 0.075 0.925 9 N -0.219 5.219 10 C 0.238 3.762 11 O -0.495 6.495 12 C -0.107 4.107 13 H 0.142 0.858 14 C -0.152 4.152 15 C -0.126 4.126 16 N -0.160 5.160 17 C -0.098 4.098 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.154 4.154 22 H 0.090 0.910 23 H 0.223 0.777 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.130 0.870 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.799 -2.825 -4.139 17.530 hybrid contribution -1.551 0.793 0.449 1.799 sum 15.248 -2.031 -3.690 15.819 Atomic orbital electron populations 1.69787 1.08040 1.29351 1.49717 1.26060 0.96418 1.02537 0.95879 0.85464 0.79628 0.77138 0.80021 1.18210 1.19602 1.15607 1.18985 0.81254 0.94943 1.50405 0.92488 1.42106 1.05961 1.07534 1.66254 1.20776 0.90195 0.83422 0.81838 1.90431 1.71302 1.32255 1.55535 1.23285 0.88930 1.00693 0.97786 0.85818 1.23265 1.02386 0.94542 0.95043 1.23879 1.02145 0.95907 0.90675 1.68999 1.36876 1.05224 1.04938 1.23355 0.96481 0.96362 0.93623 1.22282 1.01187 0.95906 0.94757 1.22473 1.01083 0.95851 0.96294 1.22281 1.01797 0.95811 0.95095 1.22074 0.99021 0.98079 0.96212 0.91009 0.77673 0.91889 0.85137 0.86966 0.92929 0.92194 0.89801 0.92551 0.92754 0.89040 0.91621 0.89908 0.95467 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.96 21.66 0.30 -55.53 16 2 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 3 Si 0.96 39.07 27.74 68.60 1.90 40.98 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 9 N -0.58 -27.75 5.09 -306.99 -1.56 -29.31 16 10 C 0.45 20.49 5.62 87.66 0.49 20.99 16 11 O -0.61 -32.94 12.40 -3.05 -0.04 -32.97 16 12 C 0.01 0.19 3.96 44.28 0.18 0.37 16 13 H 0.12 3.48 8.10 -2.38 -0.02 3.46 16 14 C -0.11 -3.12 7.86 31.24 0.25 -2.87 16 15 C 0.00 0.08 7.28 86.40 0.63 0.70 16 16 N -0.44 -13.73 5.86 -858.76 -5.03 -18.76 16 17 C 0.01 0.38 1.87 45.64 0.09 0.46 16 18 C -0.10 -2.88 6.22 31.70 0.20 -2.68 16 19 C -0.12 -2.96 6.91 31.91 0.22 -2.74 16 20 C -0.11 -2.95 6.83 31.67 0.22 -2.74 16 21 C -0.12 -3.97 5.54 31.32 0.17 -3.80 16 22 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 23 H 0.39 15.81 5.73 -92.71 -0.53 15.28 16 24 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 25 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.05 1.89 6.82 -2.39 -0.02 1.87 16 28 H 0.06 2.73 4.63 -2.39 -0.01 2.71 16 29 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 2.20 7.49 -2.38 -0.02 2.18 16 Total: -1.00 -70.67 283.28 -0.19 -70.86 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.48 Total: 35.38 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 3.76 Total: -10.64 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.29 Total: -103.60 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.04 Total: -32.97 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.98 kcal Total: -70.67 -0.19 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.338 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds