Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46732 * 2 1 4 4 C 1.50703 * 109.47164 * 240.00951 * 2 1 3 5 5 H 1.08000 * 119.99274 * 239.99980 * 4 2 1 6 6 C 1.37873 * 120.00361 * 59.99263 * 4 2 1 7 7 N 1.31515 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00081 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47505 * 89.99679 * 8 6 4 10 10 H 1.48498 * 109.47033 * 210.00146 * 8 6 4 11 11 H 1.48498 * 109.46930 * 329.99593 * 8 6 4 12 12 C 1.53000 * 109.47745 * 120.00338 * 2 1 3 13 13 N 1.46498 * 109.46708 * 300.00073 * 12 2 1 14 14 C 1.32253 * 119.99762 * 175.07782 * 13 12 2 15 15 C 1.46782 * 121.20575 * 185.61653 * 14 13 12 16 16 C 1.34712 * 118.57383 * 180.02562 * 15 14 13 17 17 N 1.35820 * 121.31060 * 359.97438 * 16 15 14 18 18 H 0.96998 * 118.60476 * 179.97438 * 17 16 15 19 19 C 1.36117 * 122.78159 * 359.97438 * 17 16 15 20 20 C 1.34775 * 121.23168 * 359.73273 * 19 17 16 21 21 F 1.35096 * 120.74655 * 180.29365 * 20 19 17 22 22 H 1.09001 * 109.46819 * 299.99330 * 1 2 3 23 23 H 1.08993 * 109.47536 * 59.99650 * 1 2 3 24 24 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47157 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47891 * 300.00434 * 3 2 1 27 27 H 1.09001 * 109.46922 * 60.00732 * 3 2 1 28 28 H 0.96990 * 120.00206 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46869 * 59.99661 * 12 2 1 30 30 H 1.08993 * 109.47169 * 180.02562 * 12 2 1 31 31 H 1.07997 * 120.71461 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.34197 * 180.02562 * 16 15 14 33 33 H 1.08007 * 119.38250 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3213 -1.1199 -4.0081 9 1 1.3429 -2.1614 -4.4121 10 1 2.4864 -0.1408 -5.1123 11 1 3.6294 -1.7577 -3.7124 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.7892 -0.5365 3.6440 15 6 1.2104 0.0649 4.8515 16 6 1.4876 -0.4934 6.0457 17 7 2.2835 -1.5896 6.1447 18 1 2.4575 -1.9592 7.0245 19 6 2.8472 -2.1913 5.0617 20 6 2.6365 -1.7252 3.8148 21 9 3.1961 -2.3336 2.7462 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9565 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 0.7085 1.1614 -3.4843 29 1 1.6768 -1.7490 1.2491 30 1 3.1301 -0.7208 1.2493 31 1 0.5767 0.9367 4.7840 32 1 1.0680 -0.0613 6.9421 33 1 3.4713 -3.0613 5.2038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603396636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = 7.320242 kcal Electronic energy + Delta-G solvation = -16890.546133 eV Core-core repulsion = 14059.493478 eV Total energy + Delta-G solvation = -2831.052655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.48393 -39.56637 -36.32101 -34.12884 -31.44007 -31.02159 -29.35731 -25.28896 -25.16724 -24.72311 -22.92648 -21.47731 -19.00024 -18.45680 -16.80146 -16.49597 -15.64429 -15.46337 -14.94261 -14.53382 -14.00900 -13.55377 -13.36170 -13.08228 -13.03712 -12.21275 -12.01257 -11.81513 -11.23614 -10.99557 -10.81646 -10.51999 -10.21016 -9.94723 -9.86488 -9.35975 -9.21080 -9.15719 -8.63139 -8.15048 -8.05883 -6.81522 -5.78134 -3.88072 1.51725 1.71130 3.06745 3.39418 3.45382 3.49435 3.79276 4.40201 4.53463 4.61993 4.70349 5.24918 5.35300 5.46704 5.88645 6.21687 6.30264 6.52931 6.57642 6.76376 6.95295 7.05983 7.13116 7.30456 7.32264 7.50949 7.56103 7.69096 7.92713 7.95373 8.36366 8.49441 8.62143 8.72765 9.13884 9.75859 11.22581 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.006122 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.256699 B = 4572.292271 C = 5017.619723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.078 3.922 3 C -0.121 4.121 4 C -0.505 4.505 5 H 0.051 0.949 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.057 3.943 13 N -0.495 5.495 14 C 0.168 3.832 15 C -0.168 4.168 16 C 0.089 3.911 17 N -0.616 5.616 18 H 0.413 0.587 19 C 0.066 3.934 20 C -0.028 4.028 21 F -0.126 7.126 22 H 0.018 0.982 23 H 0.077 0.923 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.076 0.924 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -4.286 19.348 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 C -0.179 4.179 4 C -0.544 4.544 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.071 4.071 13 N -0.206 5.206 14 C -0.016 4.016 15 C -0.195 4.195 16 C -0.036 4.036 17 N -0.227 5.227 18 H 0.247 0.753 19 C -0.061 4.061 20 C -0.057 4.057 21 F -0.105 7.105 22 H 0.037 0.963 23 H 0.095 0.905 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.481 -3.416 18.445 18.817 hybrid contribution 1.098 -1.610 -0.682 2.065 sum 2.579 -5.026 17.763 18.639 Atomic orbital electron populations 1.21676 0.97978 0.98055 1.00208 1.17977 0.92725 0.92517 0.89098 1.21669 0.97252 0.98773 1.00197 1.21157 1.30894 1.11722 0.90590 0.93080 1.24878 0.95159 0.94994 0.98577 1.69857 1.37009 1.22856 1.22709 0.86661 0.79183 0.79423 0.83085 1.20862 1.21325 1.20104 1.22556 0.97835 0.96155 0.90599 1.73035 1.20827 1.28806 0.97921 1.21711 0.95112 0.90457 0.94304 1.21368 1.06047 1.03557 0.88523 1.21297 0.94262 0.88760 0.99252 1.40340 1.46272 1.27603 1.08464 0.75285 1.20973 0.99680 0.98777 0.86640 1.19086 1.04504 0.98848 0.83287 1.91505 1.83430 1.81962 1.53604 0.96271 0.90466 0.96805 0.96781 0.90497 0.96233 0.93305 0.93233 0.93034 0.83435 0.82425 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 8.09 37.16 0.30 -3.01 16 2 C 0.08 2.13 0.57 -155.66 -0.09 2.04 16 3 C -0.12 -3.31 8.09 37.16 0.30 -3.01 16 4 C -0.50 -14.83 8.01 -34.44 -0.28 -15.10 16 5 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.86 5.15 -17.82 -0.09 1.77 16 7 N -0.89 -26.11 9.35 55.43 0.52 -25.59 16 8 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.06 1.42 3.39 -4.04 -0.01 1.41 16 13 N -0.50 -11.14 9.12 -55.78 -0.51 -11.65 16 14 C 0.17 3.06 6.98 -80.70 -0.56 2.50 16 15 C -0.17 -2.23 10.28 -37.38 -0.38 -2.61 16 16 C 0.09 0.76 11.13 -17.04 -0.19 0.57 16 17 N -0.62 -4.65 5.22 -13.07 -0.07 -4.72 16 18 H 0.41 1.35 8.88 -40.82 -0.36 0.99 16 19 C 0.07 0.71 11.12 -16.88 -0.19 0.52 16 20 C -0.03 -0.45 7.30 -37.27 -0.27 -0.72 16 21 F -0.13 -2.38 13.82 2.25 0.03 -2.35 16 22 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 23 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 27 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.05 1.26 7.31 -51.93 -0.38 0.88 16 30 H 0.05 1.32 7.29 -51.93 -0.38 0.94 16 31 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -34.74 275.82 -6.55 -41.29 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.20 Total: -2.75 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.47 Total: -15.64 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.06 Total: -41.96 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.35 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.74 -6.55 -41.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603396636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.611 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds