Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46732 * 2 1 4 4 C 1.50703 * 109.47164 * 240.00951 * 2 1 3 5 5 H 1.08000 * 119.99274 * 239.99980 * 4 2 1 6 6 C 1.37873 * 120.00361 * 59.99263 * 4 2 1 7 7 N 1.31515 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00081 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47505 * 89.99679 * 8 6 4 10 10 H 1.48498 * 109.47033 * 210.00146 * 8 6 4 11 11 H 1.48498 * 109.46930 * 329.99593 * 8 6 4 12 12 C 1.53000 * 109.47745 * 120.00338 * 2 1 3 13 13 N 1.46498 * 109.46708 * 300.00073 * 12 2 1 14 14 C 1.32253 * 119.99762 * 175.07782 * 13 12 2 15 15 C 1.46782 * 121.20575 * 185.61653 * 14 13 12 16 16 C 1.34712 * 118.57383 * 180.02562 * 15 14 13 17 17 N 1.35820 * 121.31060 * 359.97438 * 16 15 14 18 18 H 0.96998 * 118.60476 * 179.97438 * 17 16 15 19 19 C 1.36117 * 122.78159 * 359.97438 * 17 16 15 20 20 C 1.34775 * 121.23168 * 359.73273 * 19 17 16 21 21 F 1.35096 * 120.74655 * 180.29365 * 20 19 17 22 22 H 1.09001 * 109.46819 * 299.99330 * 1 2 3 23 23 H 1.08993 * 109.47536 * 59.99650 * 1 2 3 24 24 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47157 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47891 * 300.00434 * 3 2 1 27 27 H 1.09001 * 109.46922 * 60.00732 * 3 2 1 28 28 H 0.96990 * 120.00206 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46869 * 59.99661 * 12 2 1 30 30 H 1.08993 * 109.47169 * 180.02562 * 12 2 1 31 31 H 1.07997 * 120.71461 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.34197 * 180.02562 * 16 15 14 33 33 H 1.08007 * 119.38250 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3213 -1.1199 -4.0081 9 1 1.3429 -2.1614 -4.4121 10 1 2.4864 -0.1408 -5.1123 11 1 3.6294 -1.7577 -3.7124 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.7892 -0.5365 3.6440 15 6 1.2104 0.0649 4.8515 16 6 1.4876 -0.4934 6.0457 17 7 2.2835 -1.5896 6.1447 18 1 2.4575 -1.9592 7.0245 19 6 2.8472 -2.1913 5.0617 20 6 2.6365 -1.7252 3.8148 21 9 3.1961 -2.3336 2.7462 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9565 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 0.7085 1.1614 -3.4843 29 1 1.6768 -1.7490 1.2491 30 1 3.1301 -0.7208 1.2493 31 1 0.5767 0.9367 4.7840 32 1 1.0680 -0.0613 6.9421 33 1 3.4713 -3.0613 5.2038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603396636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = -18.264111 kcal Electronic energy + Delta-G solvation = -16891.655553 eV Core-core repulsion = 14059.493478 eV Total energy + Delta-G solvation = -2832.162076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.70562 -40.57426 -38.20925 -35.71005 -33.32099 -32.12082 -30.75798 -27.51841 -27.30163 -26.50064 -23.95785 -22.80730 -20.50233 -19.84579 -18.20917 -17.74224 -17.40786 -16.72828 -16.60151 -16.33911 -15.15711 -14.96324 -14.85423 -14.58734 -14.52246 -14.06129 -13.43930 -13.26844 -13.22199 -12.89960 -12.78485 -12.54771 -12.28512 -12.10777 -11.67237 -11.22882 -11.14561 -10.75207 -10.38128 -10.32093 -9.68827 -8.03595 -7.98997 -6.17630 0.43314 0.68045 1.39380 1.40398 1.51102 2.23812 2.44338 2.63606 3.21078 3.32261 3.65407 3.79258 4.31648 4.36161 4.58410 4.62239 4.84482 4.88922 4.98641 5.14101 5.22550 5.31402 5.32908 5.39910 5.46961 5.55476 5.66838 5.69069 6.06278 6.15451 6.27848 6.49048 6.58279 6.88918 7.28223 7.50237 9.00395 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.006122 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.256699 B = 4572.292271 C = 5017.619723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.065 3.935 3 C -0.102 4.102 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.020 3.980 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.093 3.907 13 N -0.583 5.583 14 C 0.181 3.819 15 C -0.221 4.221 16 C 0.146 3.854 17 N -0.583 5.583 18 H 0.446 0.554 19 C 0.133 3.867 20 C -0.114 4.114 21 F -0.155 7.155 22 H 0.025 0.975 23 H 0.056 0.944 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.056 0.944 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.148 0.852 32 H 0.224 0.776 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -5.474 23.379 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.065 3.935 3 C -0.160 4.160 4 C -0.571 4.571 5 H 0.057 0.943 6 C -0.179 4.179 7 N -0.544 5.544 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.199 1.199 12 C -0.036 4.036 13 N -0.298 5.298 14 C 0.002 3.998 15 C -0.248 4.248 16 C 0.019 3.981 17 N -0.193 5.193 18 H 0.286 0.714 19 C 0.003 3.997 20 C -0.144 4.144 21 F -0.134 7.134 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.166 0.834 32 H 0.241 0.759 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.872 -4.623 22.569 23.114 hybrid contribution 1.012 -1.353 -1.386 2.185 sum 2.884 -5.976 21.184 22.199 Atomic orbital electron populations 1.21442 0.98076 0.97123 0.99306 1.18048 0.92686 0.92601 0.90200 1.21441 0.96391 0.98846 0.99280 1.21406 1.31593 1.11946 0.92161 0.94308 1.25635 0.95173 0.95706 1.01348 1.69984 1.37294 1.23637 1.23506 0.85626 0.78649 0.78484 0.79263 1.20047 1.20261 1.19903 1.21836 0.95503 0.94414 0.91887 1.73005 1.27468 1.31131 0.98184 1.22629 0.92404 0.90076 0.94710 1.21492 1.09139 1.05778 0.88372 1.22142 0.90087 0.86287 0.99567 1.40804 1.43031 1.26075 1.09400 0.71363 1.21529 0.95654 0.97492 0.85029 1.19317 1.08980 1.01171 0.84895 1.91421 1.84217 1.82450 1.55350 0.95578 0.92496 0.97638 0.97679 0.92503 0.95592 0.93049 0.96210 0.96216 0.83394 0.75940 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.89 8.09 71.98 0.58 -5.30 16 2 C 0.07 3.85 0.57 -52.93 -0.03 3.82 16 3 C -0.10 -5.92 8.09 71.98 0.58 -5.33 16 4 C -0.53 -33.11 8.01 25.60 0.21 -32.90 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 6 C 0.02 1.20 5.15 84.65 0.44 1.64 16 7 N -0.91 -55.24 9.35 21.45 0.20 -55.04 16 8 Si 0.95 47.00 29.54 68.60 2.03 49.03 16 9 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 12 C 0.09 5.07 3.39 86.38 0.29 5.36 16 13 N -0.58 -28.12 9.12 -330.38 -3.01 -31.14 16 14 C 0.18 6.73 6.98 43.61 0.30 7.03 16 15 C -0.22 -5.36 10.28 23.70 0.24 -5.12 16 16 C 0.15 1.54 11.13 83.27 0.93 2.46 16 17 N -0.58 -4.55 5.22 -195.27 -1.02 -5.57 16 18 H 0.45 -1.19 8.88 -92.71 -0.82 -2.01 16 19 C 0.13 2.20 11.12 83.23 0.93 3.13 16 20 C -0.11 -3.66 7.30 23.76 0.17 -3.48 16 21 F -0.16 -6.23 13.82 44.97 0.62 -5.61 16 22 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 23 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 24 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 27 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 28 H 0.26 14.98 8.31 -92.72 -0.77 14.21 16 29 H 0.02 1.11 7.31 -2.39 -0.02 1.10 16 30 H 0.02 1.12 7.29 -2.39 -0.02 1.10 16 31 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.22 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -86.45 275.82 3.75 -82.70 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: 0.30 Total: -5.67 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.64 Total: -28.71 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.83 Total: -91.75 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.62 Total: -5.61 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -86.45 3.75 -82.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603396636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -86.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds