Wall clock time and date at job start Sun Mar 29 2020 23:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47184 * 240.00101 * 3 2 1 5 5 H 1.48504 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47537 * 119.99983 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 H 1.09002 * 110.34452 * 32.71903 * 17 16 14 19 19 C 1.51101 * 110.38798 * 270.30782 * 17 16 14 20 20 C 1.30520 * 111.10295 * 257.61922 * 19 17 16 21 21 C 1.51105 * 111.10620 * 0.02562 * 20 19 17 22 22 C 1.54628 * 104.72325 * 343.55845 * 21 20 19 23 23 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 25 25 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 26 26 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 27 27 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 28 28 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 29 29 H 1.00898 * 111.00326 * 183.95864 * 13 11 10 30 30 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 31 31 H 1.07999 * 124.44873 * 77.60237 * 19 17 16 32 32 H 1.08004 * 124.44988 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38562 * 224.74471 * 21 20 19 34 34 H 1.09001 * 110.38850 * 102.37397 * 21 20 19 35 35 H 1.08999 * 111.04135 * 266.60088 * 22 21 20 36 36 H 1.09001 * 111.03792 * 142.66868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 1 4.5280 -7.6327 0.5519 19 6 3.1829 -8.8612 1.6946 20 6 3.2495 -9.2088 2.9509 21 6 4.0360 -8.1989 3.7539 22 6 4.8064 -7.3718 2.6987 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8895 28 1 1.3476 -5.1034 -2.0499 29 1 0.1636 -5.9552 -1.2509 30 1 2.6973 -5.9560 2.1190 31 1 2.6719 -9.4278 0.9302 32 1 2.8006 -10.1007 3.3626 33 1 4.7326 -8.7049 4.4224 34 1 3.3621 -7.5572 4.3214 35 1 5.8033 -7.7803 2.5329 36 1 4.8585 -6.3218 2.9864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700562566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:18 Heat of formation + Delta-G solvation = -35.194351 kcal Electronic energy + Delta-G solvation = -16698.867446 eV Core-core repulsion = 13989.431525 eV Total energy + Delta-G solvation = -2709.435921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15345 -38.33050 -35.14449 -33.53354 -32.77710 -30.08240 -29.25622 -27.86928 -26.00227 -23.57897 -21.04381 -20.69100 -19.81237 -18.96536 -17.28852 -16.53481 -16.18687 -15.81999 -15.40187 -14.73256 -14.37475 -14.15451 -13.78424 -13.38603 -12.47146 -12.29086 -12.20022 -11.99802 -11.79288 -11.63727 -11.51203 -11.24787 -10.87002 -10.66314 -10.56228 -10.13850 -9.78677 -9.39769 -9.30989 -9.05766 -8.98926 -8.32404 -8.17486 -5.92834 -3.95082 1.94112 2.81312 3.36608 3.41189 3.43201 3.45701 4.31962 4.42203 4.50820 4.87687 4.90427 5.02278 5.18692 5.20132 5.42590 5.47962 5.55224 5.56954 5.63662 5.77967 5.85947 5.89752 6.26254 6.43795 6.51927 6.62821 6.67256 7.10184 7.40706 7.64324 7.76935 7.82154 7.97348 8.14314 8.36321 8.49461 9.12774 9.67977 11.18056 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.004789 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.572950 B = 5845.145572 C = 6320.439232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.078 3.922 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.555 6.555 16 N -0.719 5.719 17 C 0.159 3.841 18 H 0.092 0.908 19 C -0.171 4.171 20 C -0.157 4.157 21 C -0.104 4.104 22 C -0.134 4.134 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.013 0.987 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.347 0.653 29 H 0.333 0.667 30 H 0.402 0.598 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -16.596 7.064 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.038 4.038 12 H 0.115 0.885 13 N -0.335 5.335 14 C 0.270 3.730 15 O -0.432 6.432 16 N -0.371 5.371 17 C 0.054 3.946 18 H 0.110 0.890 19 C -0.190 4.190 20 C -0.176 4.176 21 C -0.141 4.141 22 C -0.172 4.172 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.237 0.763 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.143 -16.198 6.532 18.514 hybrid contribution 0.845 0.117 0.291 0.901 sum 6.988 -16.080 6.822 18.814 Atomic orbital electron populations 1.69966 1.05956 1.26516 1.50768 1.24986 0.94798 0.99028 0.95470 0.86712 0.79608 0.83437 0.78518 1.20318 1.21329 1.20386 1.21245 0.92856 0.91348 1.50703 0.93050 1.19013 0.93567 0.89821 0.98197 1.21651 0.98834 0.92188 1.00645 1.21839 0.93545 0.93304 0.95064 0.88512 1.58998 1.26925 1.44250 1.03296 1.22779 0.82091 0.85531 0.82589 1.90634 1.60957 1.54448 1.37184 1.46210 1.46323 1.34198 1.10387 1.20670 0.89767 0.84715 0.99414 0.89031 1.23608 1.00816 0.97174 0.97397 1.23340 0.99627 0.99212 0.95387 1.21432 0.98278 0.96481 0.97917 1.22744 0.98716 1.01380 0.94327 0.93047 0.94676 0.96890 0.92858 0.92859 0.83849 0.85501 0.76315 0.85978 0.85779 0.90826 0.90397 0.89807 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 10 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.84 8.44 -5.65 -0.05 -13.89 16 14 C 0.48 7.73 7.07 -10.98 -0.08 7.65 16 15 O -0.55 -10.35 15.90 5.55 0.09 -10.26 16 16 N -0.72 -9.18 5.09 -53.91 -0.27 -9.46 16 17 C 0.16 1.84 3.25 -68.04 -0.22 1.62 16 18 H 0.09 1.23 7.56 -51.93 -0.39 0.84 16 19 C -0.17 -1.85 10.41 -35.70 -0.37 -2.22 16 20 C -0.16 -1.39 10.77 -35.69 -0.38 -1.78 16 21 C -0.10 -0.82 6.81 -26.83 -0.18 -1.00 16 22 C -0.13 -1.17 6.79 -25.02 -0.17 -1.34 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16 29 H 0.33 4.99 9.06 -39.29 -0.36 4.63 16 30 H 0.40 4.43 8.62 -40.82 -0.35 4.08 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.71 8.06 -51.93 -0.42 0.30 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -32.22 304.82 -7.83 -40.05 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.60 Total: 9.38 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.30 Total: -10.90 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.41 Total: -49.60 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.22 -7.83 -40.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700562566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds