Wall clock time and date at job start Sun Mar 29 2020 23:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47184 * 240.00101 * 3 2 1 5 5 H 1.48504 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47537 * 119.99983 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 H 1.09002 * 110.34452 * 32.71903 * 17 16 14 19 19 C 1.51101 * 110.38798 * 270.30782 * 17 16 14 20 20 C 1.30520 * 111.10295 * 257.61922 * 19 17 16 21 21 C 1.51105 * 111.10620 * 0.02562 * 20 19 17 22 22 C 1.54628 * 104.72325 * 343.55845 * 21 20 19 23 23 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 25 25 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 26 26 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 27 27 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 28 28 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 29 29 H 1.00898 * 111.00326 * 183.95864 * 13 11 10 30 30 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 31 31 H 1.07999 * 124.44873 * 77.60237 * 19 17 16 32 32 H 1.08004 * 124.44988 * 179.97438 * 20 19 17 33 33 H 1.08998 * 110.38562 * 224.74471 * 21 20 19 34 34 H 1.09001 * 110.38850 * 102.37397 * 21 20 19 35 35 H 1.08999 * 111.04135 * 266.60088 * 22 21 20 36 36 H 1.09001 * 111.03792 * 142.66868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 1 4.5280 -7.6327 0.5519 19 6 3.1829 -8.8612 1.6946 20 6 3.2495 -9.2088 2.9509 21 6 4.0360 -8.1989 3.7539 22 6 4.8064 -7.3718 2.6987 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8895 28 1 1.3476 -5.1034 -2.0499 29 1 0.1636 -5.9552 -1.2509 30 1 2.6973 -5.9560 2.1190 31 1 2.6719 -9.4278 0.9302 32 1 2.8006 -10.1007 3.3626 33 1 4.7326 -8.7049 4.4224 34 1 3.3621 -7.5572 4.3214 35 1 5.8033 -7.7803 2.5329 36 1 4.8585 -6.3218 2.9864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700562566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:17 Heat of formation + Delta-G solvation = -58.464416 kcal Electronic energy + Delta-G solvation = -16699.876512 eV Core-core repulsion = 13989.431525 eV Total energy + Delta-G solvation = -2710.444987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29416 -39.31578 -36.75430 -34.80733 -34.60708 -31.92194 -29.98566 -28.96347 -27.59711 -25.25871 -22.51363 -21.71462 -21.23073 -19.75883 -18.72978 -18.08951 -17.53747 -16.98922 -16.69452 -16.41138 -15.75541 -15.38015 -15.03851 -14.68943 -14.26154 -13.82945 -13.45828 -13.27454 -12.90491 -12.76629 -12.54195 -12.50895 -12.30787 -12.24386 -12.02542 -11.75914 -11.64120 -11.25836 -11.00925 -10.47836 -10.18366 -10.09833 -9.57164 -8.12691 -6.23152 1.15322 1.42697 1.45580 1.51996 1.54172 2.35806 2.46151 3.20339 3.55420 3.58414 3.69081 3.87923 4.11539 4.17852 4.31703 4.35416 4.48693 4.68986 4.78641 4.85330 4.94910 4.95594 5.12223 5.17259 5.26038 5.48854 5.54155 5.57906 5.85197 5.85887 5.99409 6.09654 6.31311 6.46173 6.54177 6.95340 7.16790 7.45005 8.98390 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.004789 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.572950 B = 5845.145572 C = 6320.439232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.086 3.914 12 H 0.109 0.891 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.584 6.584 16 N -0.705 5.705 17 C 0.154 3.846 18 H 0.067 0.933 19 C -0.204 4.204 20 C -0.132 4.132 21 C -0.103 4.103 22 C -0.128 4.128 23 H 0.262 0.738 24 H 0.004 0.996 25 H -0.005 1.005 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.345 0.655 29 H 0.346 0.654 30 H 0.412 0.588 31 H 0.108 0.892 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -16.874 8.854 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.348 5.348 14 C 0.274 3.726 15 O -0.465 6.465 16 N -0.356 5.356 17 C 0.049 3.951 18 H 0.085 0.915 19 C -0.223 4.223 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.166 4.166 23 H 0.071 0.929 24 H 0.023 0.977 25 H 0.013 0.987 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.249 0.751 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.423 -16.495 8.363 19.928 hybrid contribution 0.436 0.147 -0.225 0.512 sum 7.859 -16.348 8.138 19.881 Atomic orbital electron populations 1.70101 1.07668 1.27578 1.51690 1.25898 0.95682 1.03024 0.94939 0.85590 0.78328 0.78580 0.79052 1.19663 1.20945 1.19001 1.21706 0.93369 0.92723 1.50494 0.92582 1.18827 0.93887 0.91359 0.95749 1.21385 0.97712 0.92033 1.00805 1.21641 0.93725 0.92168 0.95469 0.87312 1.58980 1.27236 1.45224 1.03325 1.22392 0.81863 0.85129 0.83179 1.90625 1.61950 1.55489 1.38415 1.46132 1.45545 1.34267 1.09666 1.20818 0.89694 0.84663 0.99900 0.91489 1.23470 1.03051 0.97511 0.98241 1.23644 0.97525 0.99329 0.94567 1.21501 0.98583 0.96222 0.97696 1.22760 0.98757 1.02113 0.92954 0.92932 0.97706 0.98703 0.91292 0.94010 0.84185 0.84129 0.75086 0.87343 0.83901 0.88705 0.89428 0.88700 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.04 2.03 4.86 29.84 0.15 2.18 16 10 C -0.08 -3.28 4.78 30.59 0.15 -3.13 16 11 C 0.09 2.89 3.15 44.17 0.14 3.03 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.82 -28.45 8.44 -171.79 -1.45 -29.90 16 14 C 0.49 15.44 7.07 87.66 0.62 16.06 16 15 O -0.58 -22.03 15.90 -3.04 -0.05 -22.08 16 16 N -0.70 -17.23 5.09 -442.85 -2.25 -19.48 16 17 C 0.15 3.41 3.25 44.92 0.15 3.56 16 18 H 0.07 1.82 7.56 -2.39 -0.02 1.80 16 19 C -0.20 -4.21 10.41 26.27 0.27 -3.94 16 20 C -0.13 -1.99 10.77 26.27 0.28 -1.71 16 21 C -0.10 -1.26 6.81 30.53 0.21 -1.05 16 22 C -0.13 -1.93 6.79 31.70 0.22 -1.72 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.34 12.29 8.58 -89.70 -0.77 11.52 16 29 H 0.35 10.39 9.06 -89.70 -0.81 9.58 16 30 H 0.41 8.30 8.62 -92.71 -0.80 7.50 16 31 H 0.11 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.27 8.06 -2.39 -0.02 1.25 16 Total: -1.00 -69.55 304.82 0.14 -69.42 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -1.29 Total: 29.09 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 2.87 Total: -16.87 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.42 Total: -105.94 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.55 0.14 -69.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700562566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds