Wall clock time and date at job start Sun Mar 29 2020 23:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47328 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47314 * 119.99852 * 3 2 1 7 7 C 1.37878 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00486 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47021 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47050 * 305.00249 * 11 10 9 13 13 N 1.46902 * 109.46626 * 65.00073 * 11 10 9 14 14 C 1.50697 * 109.47239 * 184.99913 * 11 10 9 15 15 O 1.21279 * 120.00184 * 260.00271 * 14 11 10 16 16 N 1.34785 * 119.99590 * 80.00448 * 14 11 10 17 17 C 1.46500 * 119.99574 * 179.97438 * 16 14 11 18 18 H 1.08993 * 110.34643 * 324.16516 * 17 16 14 19 19 C 1.51105 * 110.38916 * 86.45374 * 17 16 14 20 20 C 1.30527 * 111.10327 * 102.36873 * 19 17 16 21 21 C 1.51091 * 111.10640 * 0.02562 * 20 19 17 22 22 C 1.54635 * 110.38211 * 201.75329 * 17 16 14 23 23 H 0.97002 * 120.00068 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46528 * 60.00253 * 9 7 2 25 25 H 1.08992 * 109.47155 * 300.00583 * 9 7 2 26 26 H 1.09004 * 109.46986 * 60.00901 * 10 9 7 27 27 H 1.08992 * 109.47518 * 300.00179 * 10 9 7 28 28 H 1.00901 * 110.99968 * 296.04218 * 13 11 10 29 29 H 1.00895 * 111.00001 * 60.00364 * 13 11 10 30 30 H 0.96998 * 119.99744 * 359.97438 * 16 14 11 31 31 H 1.08001 * 124.44703 * 282.39814 * 19 17 16 32 32 H 1.08004 * 124.44339 * 179.97438 * 20 19 17 33 33 H 1.09007 * 110.38803 * 135.24592 * 21 20 19 34 34 H 1.09000 * 110.39134 * 257.50700 * 21 20 19 35 35 H 1.08996 * 111.04180 * 23.85687 * 22 17 16 36 36 H 1.09002 * 111.03022 * 147.79336 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7878 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2568 14 6 2.4548 -6.1299 0.1226 15 8 2.7870 -6.7531 -0.8633 16 7 2.9572 -6.4593 1.3292 17 6 3.9042 -7.5706 1.4496 18 1 3.6465 -8.3656 0.7499 19 6 5.3151 -7.0891 1.2029 20 6 5.9672 -6.9500 2.3250 21 6 5.1002 -7.3160 3.5070 22 6 3.9207 -8.1095 2.8989 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8896 27 1 2.8720 -3.6043 -0.8904 28 1 0.0242 -4.4001 -1.3330 29 1 1.3491 -5.1022 -2.0525 30 1 2.6917 -5.9606 2.1176 31 1 5.7293 -6.8862 0.2263 32 1 6.9922 -6.6177 2.3987 33 1 5.6566 -7.9391 4.2075 34 1 4.7378 -6.4168 4.0051 35 1 2.9875 -7.8790 3.4128 36 1 4.1204 -9.1809 2.9156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700562568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:25 Heat of formation + Delta-G solvation = -35.913649 kcal Electronic energy + Delta-G solvation = -16775.267796 eV Core-core repulsion = 14065.800684 eV Total energy + Delta-G solvation = -2709.467112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02896 -38.19708 -35.40126 -33.41829 -32.83268 -29.87686 -29.18164 -27.88485 -26.03209 -23.77001 -21.06405 -20.67421 -19.81792 -18.84447 -17.42548 -16.42854 -16.28421 -15.72502 -14.72823 -14.60536 -14.36706 -14.31742 -13.76632 -13.02564 -13.01243 -12.35523 -12.14393 -12.09337 -11.75113 -11.64664 -11.53683 -11.19395 -11.07373 -10.90496 -10.70433 -9.97807 -9.92655 -9.39616 -9.25920 -9.04309 -8.95143 -8.43615 -8.16181 -6.08314 -4.11476 2.05647 2.98487 3.28468 3.33292 3.35704 3.47037 4.37978 4.39514 4.49567 4.90845 5.04340 5.19322 5.23500 5.27654 5.28115 5.55652 5.59805 5.61940 5.69100 5.78867 5.82383 5.97372 6.30483 6.38963 6.53287 6.60960 6.73679 6.88655 7.46070 7.52455 7.62415 7.75511 7.88683 7.92793 8.31555 8.52405 8.94270 9.53351 11.02584 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.005263 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.641045 B = 5318.844645 C = 5951.982669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.136 4.136 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.539 6.539 16 N -0.724 5.724 17 C 0.164 3.836 18 H 0.091 0.909 19 C -0.169 4.169 20 C -0.158 4.158 21 C -0.104 4.104 22 C -0.132 4.132 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.354 0.646 29 H 0.345 0.655 30 H 0.400 0.600 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -13.770 6.777 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.041 4.041 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.414 6.414 16 N -0.376 5.376 17 C 0.059 3.941 18 H 0.109 0.891 19 C -0.189 4.189 20 C -0.177 4.177 21 C -0.141 4.141 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.235 0.765 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.112 -14.829 6.325 17.621 hybrid contribution 0.865 2.304 0.158 2.466 sum 7.977 -12.526 6.482 16.203 Atomic orbital electron populations 1.69937 1.06020 1.26891 1.50383 1.25004 0.94860 0.99270 0.95110 0.86645 0.79600 0.83037 0.78659 1.20226 1.21191 1.20233 1.21148 0.92979 0.90929 1.51219 0.92801 1.19100 0.93719 0.91110 0.97337 1.22366 0.99830 0.93962 1.01449 1.21476 0.94694 0.92354 0.95545 0.88652 1.58743 1.18466 1.55855 1.03211 1.20912 0.80866 0.84316 0.82570 1.90622 1.60513 1.53260 1.37032 1.46056 1.46279 1.35160 1.10150 1.20632 0.86954 0.89371 0.97102 0.89125 1.23632 0.95701 1.00708 0.98822 1.23318 0.99454 1.00197 0.94735 1.21422 0.95483 1.00091 0.97081 1.22721 0.99231 1.00419 0.94613 0.92821 0.96398 0.96349 0.92586 0.92754 0.83100 0.84164 0.76501 0.85832 0.85776 0.90918 0.90404 0.90035 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.07 1.29 3.21 -68.86 -0.22 1.07 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 13 N -0.83 -14.61 8.94 -5.65 -0.05 -14.66 16 14 C 0.53 8.89 7.07 -10.98 -0.08 8.81 16 15 O -0.54 -10.71 15.95 5.56 0.09 -10.62 16 16 N -0.72 -9.63 5.12 -53.90 -0.28 -9.90 16 17 C 0.16 1.96 3.20 -68.02 -0.22 1.74 16 18 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 19 C -0.17 -2.05 10.39 -35.70 -0.37 -2.42 16 20 C -0.16 -1.60 10.77 -35.70 -0.38 -1.98 16 21 C -0.10 -0.88 6.81 -26.84 -0.18 -1.06 16 22 C -0.13 -1.14 6.78 -25.02 -0.17 -1.31 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 29 H 0.35 6.17 8.58 -39.29 -0.34 5.83 16 30 H 0.40 4.56 8.57 -40.82 -0.35 4.21 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -31.27 302.88 -7.75 -39.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.50 Total: 11.39 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.30 Total: -10.75 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.41 Total: -49.93 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.27 -7.75 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700562568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.115 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds