Wall clock time and date at job start Sun Mar 29 2020 23:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48499 * 109.47328 * 240.00101 * 3 2 1 5 5 H 1.48503 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47314 * 119.99852 * 3 2 1 7 7 C 1.37878 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00486 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47021 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47050 * 305.00249 * 11 10 9 13 13 N 1.46902 * 109.46626 * 65.00073 * 11 10 9 14 14 C 1.50697 * 109.47239 * 184.99913 * 11 10 9 15 15 O 1.21279 * 120.00184 * 260.00271 * 14 11 10 16 16 N 1.34785 * 119.99590 * 80.00448 * 14 11 10 17 17 C 1.46500 * 119.99574 * 179.97438 * 16 14 11 18 18 H 1.08993 * 110.34643 * 324.16516 * 17 16 14 19 19 C 1.51105 * 110.38916 * 86.45374 * 17 16 14 20 20 C 1.30527 * 111.10327 * 102.36873 * 19 17 16 21 21 C 1.51091 * 111.10640 * 0.02562 * 20 19 17 22 22 C 1.54635 * 110.38211 * 201.75329 * 17 16 14 23 23 H 0.97002 * 120.00068 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46528 * 60.00253 * 9 7 2 25 25 H 1.08992 * 109.47155 * 300.00583 * 9 7 2 26 26 H 1.09004 * 109.46986 * 60.00901 * 10 9 7 27 27 H 1.08992 * 109.47518 * 300.00179 * 10 9 7 28 28 H 1.00901 * 110.99968 * 296.04218 * 13 11 10 29 29 H 1.00895 * 111.00001 * 60.00364 * 13 11 10 30 30 H 0.96998 * 119.99744 * 359.97438 * 16 14 11 31 31 H 1.08001 * 124.44703 * 282.39814 * 19 17 16 32 32 H 1.08004 * 124.44339 * 179.97438 * 20 19 17 33 33 H 1.09007 * 110.38803 * 135.24592 * 21 20 19 34 34 H 1.09000 * 110.39134 * 257.50700 * 21 20 19 35 35 H 1.08996 * 111.04180 * 23.85687 * 22 17 16 36 36 H 1.09002 * 111.03022 * 147.79336 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7878 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2568 14 6 2.4548 -6.1299 0.1226 15 8 2.7870 -6.7531 -0.8633 16 7 2.9572 -6.4593 1.3292 17 6 3.9042 -7.5706 1.4496 18 1 3.6465 -8.3656 0.7499 19 6 5.3151 -7.0891 1.2029 20 6 5.9672 -6.9500 2.3250 21 6 5.1002 -7.3160 3.5070 22 6 3.9207 -8.1095 2.8989 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8896 27 1 2.8720 -3.6043 -0.8904 28 1 0.0242 -4.4001 -1.3330 29 1 1.3491 -5.1022 -2.0525 30 1 2.6917 -5.9606 2.1176 31 1 5.7293 -6.8862 0.2263 32 1 6.9922 -6.6177 2.3987 33 1 5.6566 -7.9391 4.2075 34 1 4.7378 -6.4168 4.0051 35 1 2.9875 -7.8790 3.4128 36 1 4.1204 -9.1809 2.9156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700562568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:24 Heat of formation + Delta-G solvation = -58.177817 kcal Electronic energy + Delta-G solvation = -16776.233243 eV Core-core repulsion = 14065.800684 eV Total energy + Delta-G solvation = -2710.432559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20866 -39.25471 -37.01409 -34.84315 -34.55339 -31.69145 -29.96522 -29.02220 -27.56169 -25.46623 -22.57005 -21.68495 -21.21301 -19.72482 -18.93910 -18.15754 -17.43308 -16.81996 -16.51409 -15.97660 -15.77318 -15.58538 -15.06660 -14.67619 -14.38728 -14.02464 -13.49590 -13.24665 -12.93023 -12.86384 -12.67768 -12.54407 -12.48314 -12.25560 -11.99688 -11.81248 -11.71954 -11.32522 -10.81313 -10.56131 -10.10970 -10.01968 -9.63744 -8.21708 -6.32328 1.17001 1.39636 1.41226 1.49296 1.63791 2.32168 2.40402 3.11863 3.58371 3.70289 3.76574 3.84229 4.12185 4.21433 4.24727 4.37139 4.52821 4.65091 4.72374 4.82749 4.89406 4.96957 5.07512 5.15016 5.20550 5.45477 5.53554 5.57816 5.64905 5.79924 5.87038 6.06748 6.20828 6.46714 6.56563 6.82686 7.26396 7.36804 8.88891 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.005263 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.641045 B = 5318.844645 C = 5951.982669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.081 3.919 12 H 0.111 0.889 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.573 6.573 16 N -0.708 5.708 17 C 0.158 3.842 18 H 0.071 0.929 19 C -0.206 4.206 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.122 4.122 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.353 0.647 29 H 0.343 0.657 30 H 0.412 0.588 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 -13.894 8.599 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.313 3.687 15 O -0.452 6.452 16 N -0.360 5.360 17 C 0.054 3.946 18 H 0.089 0.911 19 C -0.226 4.226 20 C -0.155 4.155 21 C -0.140 4.140 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.189 -14.965 8.188 18.922 hybrid contribution 0.563 2.312 -0.377 2.409 sum 8.752 -12.653 7.811 17.254 Atomic orbital electron populations 1.70051 1.07486 1.27863 1.51204 1.25850 0.95719 1.02926 0.94659 0.85600 0.78394 0.78646 0.79008 1.19721 1.20704 1.19189 1.21587 0.93298 0.92514 1.51117 0.92842 1.18965 0.94005 0.91945 0.95762 1.22106 0.98731 0.93821 1.01182 1.21424 0.94796 0.91298 0.95941 0.87165 1.58760 1.18394 1.55621 1.03351 1.20760 0.80732 0.83991 0.83215 1.90609 1.61712 1.54492 1.38406 1.45985 1.45542 1.35158 1.09327 1.20802 0.86415 0.88231 0.99111 0.91121 1.23529 0.96309 1.03921 0.98815 1.23647 0.99978 0.97194 0.94699 1.21500 0.95142 1.00769 0.96595 1.22740 1.00135 1.01242 0.91882 0.92686 0.97953 0.97832 0.91723 0.94045 0.83252 0.84428 0.75153 0.87919 0.84429 0.88581 0.89641 0.88722 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.03 1.50 4.74 29.85 0.14 1.64 16 10 C -0.12 -4.70 4.78 30.60 0.15 -4.56 16 11 C 0.08 2.76 3.21 44.17 0.14 2.90 16 12 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 13 N -0.83 -29.39 8.94 -171.79 -1.54 -30.92 16 14 C 0.53 17.63 7.07 87.65 0.62 18.25 16 15 O -0.57 -23.12 15.95 -3.03 -0.05 -23.17 16 16 N -0.71 -18.05 5.12 -442.83 -2.27 -20.31 16 17 C 0.16 3.63 3.20 44.93 0.14 3.78 16 18 H 0.07 1.90 7.65 -2.39 -0.02 1.88 16 19 C -0.21 -4.88 10.39 26.26 0.27 -4.60 16 20 C -0.14 -2.45 10.77 26.26 0.28 -2.17 16 21 C -0.10 -1.38 6.81 30.52 0.21 -1.17 16 22 C -0.12 -1.76 6.78 31.70 0.22 -1.55 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.00 0.11 6.87 -2.38 -0.02 0.10 16 25 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.35 12.55 7.55 -89.69 -0.68 11.88 16 29 H 0.34 12.48 8.58 -89.70 -0.77 11.71 16 30 H 0.41 8.53 8.57 -92.71 -0.79 7.73 16 31 H 0.10 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.15 8.03 -2.39 -0.02 1.13 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.96 302.88 0.18 -66.78 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -1.15 Total: 32.91 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 2.87 Total: -16.62 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.52 Total: -105.31 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.96 0.18 -66.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700562568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.603 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds