Wall clock time and date at job start Sun Mar 29 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48504 * 109.46838 * 240.00145 * 3 2 1 5 5 H 1.48504 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47469 * 120.00174 * 3 2 1 7 7 C 1.37880 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 186.73697 * 7 2 1 9 9 C 1.50699 * 119.99960 * 6.46453 * 7 2 1 10 10 C 1.53001 * 115.55319 * 275.13208 * 9 7 2 11 11 N 1.46502 * 109.46464 * 294.83339 * 10 9 7 12 12 C 1.34777 * 119.99444 * 177.47047 * 11 10 9 13 13 O 1.21277 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99768 * 179.97438 * 12 11 10 15 15 H 1.08996 * 115.55006 * 325.66101 * 14 12 11 16 16 C 1.52997 * 117.50139 * 111.37645 * 14 12 11 17 17 C 1.52998 * 117.49730 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.49879 * 145.01882 * 17 14 12 19 19 C 1.53007 * 117.50047 * 0.02562 * 17 14 12 20 20 N 1.46903 * 109.47122 * 175.00209 * 19 17 14 21 21 C 1.53002 * 117.49849 * 129.45730 * 9 7 2 22 22 C 1.53008 * 117.49787 * 60.79836 * 9 7 2 23 23 H 0.97001 * 120.00055 * 5.02645 * 1 2 3 24 24 H 1.08999 * 109.47007 * 54.82799 * 10 9 7 25 25 H 1.08993 * 109.47231 * 174.82856 * 10 9 7 26 26 H 0.96993 * 120.00606 * 357.46238 * 11 10 9 27 27 H 1.08993 * 117.50018 * 214.97775 * 16 14 12 28 28 H 1.09005 * 117.49648 * 0.02562 * 16 14 12 29 29 H 1.09006 * 109.47014 * 295.00076 * 19 17 14 30 30 H 1.09001 * 109.47030 * 55.00318 * 19 17 14 31 31 H 1.00899 * 110.99804 * 56.04398 * 20 19 17 32 32 H 1.00894 * 110.99880 * 179.97438 * 20 19 17 33 33 H 1.08998 * 117.50007 * 0.02562 * 21 9 7 34 34 H 1.08994 * 117.49656 * 145.01981 * 21 9 7 35 35 H 1.08990 * 117.49862 * 214.97963 * 22 9 7 36 36 H 1.09000 * 117.49973 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2582 -2.4951 -0.1458 10 6 0.6907 -3.0797 1.1492 11 7 1.7921 -3.4496 2.0416 12 6 1.5290 -3.9411 3.2687 13 8 0.3807 -4.0767 3.6342 14 6 2.6620 -4.3222 4.1865 15 1 3.5456 -4.7321 3.6975 16 6 2.8787 -3.4647 5.4350 17 6 2.2981 -4.8747 5.5661 18 1 2.9429 -5.6475 5.9848 19 6 0.8119 -4.9987 5.9080 20 7 0.6630 -5.6539 7.2144 21 6 1.7551 -3.4790 -1.2069 22 6 0.4522 -2.7067 -1.4291 23 1 -0.4850 0.8368 -0.0736 24 1 0.0610 -2.3363 1.6381 25 1 0.0969 -3.9641 0.9190 26 1 2.7106 -3.3409 1.7494 27 1 3.9052 -3.3102 5.7674 28 1 2.2016 -2.6252 5.5927 29 1 0.3638 -4.0058 5.9463 30 1 0.3118 -5.5939 5.1440 31 1 1.1725 -5.1558 7.9288 32 1 -0.3103 -5.7472 7.4632 33 1 2.6220 -3.1856 -1.7988 34 1 1.6774 -4.5428 -0.9825 35 1 -0.4819 -3.2627 -1.3507 36 1 0.4615 -1.9047 -2.1672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715100930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:55 Heat of formation + Delta-G solvation = 4.542734 kcal Electronic energy + Delta-G solvation = -16978.822351 eV Core-core repulsion = 14271.109559 eV Total energy + Delta-G solvation = -2707.712792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66931 -37.22031 -36.15975 -33.45969 -33.09532 -31.99411 -26.95358 -25.50431 -25.01545 -23.09345 -21.22246 -20.73312 -19.63134 -19.00989 -16.82904 -16.28486 -15.66259 -15.21035 -14.73014 -14.67246 -14.34553 -13.90352 -13.50415 -13.15826 -12.83570 -12.61804 -12.18506 -11.77836 -11.60454 -11.25028 -11.07849 -10.91018 -10.56844 -10.29844 -10.25507 -10.11429 -9.66875 -9.15289 -8.97997 -8.59418 -8.50114 -8.29888 -8.07334 -6.11071 -4.19308 2.99862 3.25353 3.31578 3.32819 3.74810 4.04435 4.34200 4.46381 4.97039 5.01593 5.17538 5.18094 5.27272 5.43454 5.51319 5.78489 5.82600 6.00408 6.07076 6.08757 6.30932 6.44611 6.46004 6.53953 6.66643 6.87142 7.06235 7.18505 7.29118 7.40982 7.46020 7.48089 7.78767 8.30805 8.31451 8.81497 8.90284 9.48059 10.97572 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.006151 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.116065 B = 4550.742730 C = 5011.346300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.698 5.698 12 C 0.532 3.468 13 O -0.556 6.556 14 C -0.182 4.182 15 H 0.121 0.879 16 C -0.156 4.156 17 C -0.119 4.119 18 H 0.115 0.885 19 C 0.098 3.902 20 N -0.857 5.857 21 C -0.210 4.210 22 C -0.148 4.148 23 H 0.262 0.738 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.400 0.600 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.334 0.666 32 H 0.340 0.660 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -6.869 8.145 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.026 3.974 10 C 0.040 3.960 11 N -0.345 5.345 12 C 0.317 3.683 13 O -0.435 6.435 14 C -0.204 4.204 15 H 0.139 0.861 16 C -0.193 4.193 17 C -0.138 4.138 18 H 0.133 0.867 19 C -0.031 4.031 20 N -0.386 5.386 21 C -0.247 4.247 22 C -0.187 4.187 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.233 0.767 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.181 -7.435 8.066 11.740 hybrid contribution 0.498 1.995 -0.111 2.059 sum 4.678 -5.440 7.955 10.713 Atomic orbital electron populations 1.70000 1.05886 1.27119 1.47998 1.24966 0.94775 0.98935 0.94356 0.86720 0.79704 0.83287 0.78650 1.20216 1.21269 1.20207 1.20311 0.92694 0.88747 1.51876 0.92261 1.19051 0.98576 0.93953 0.85839 1.21005 0.87535 0.96899 0.90535 1.45921 1.11325 1.62630 1.14649 1.19558 0.88962 0.77658 0.82087 1.90628 1.22210 1.55647 1.75056 1.22310 1.00540 1.07093 0.90455 0.86113 1.23091 1.02544 0.94778 0.98904 1.22340 0.97883 0.96745 0.96793 0.86744 1.21439 0.93166 0.97990 0.90540 1.58845 1.16823 1.57885 1.05011 1.23023 0.98598 0.95647 1.07480 1.22489 0.92367 1.01125 1.02678 0.92816 0.90812 0.94672 0.76651 0.88035 0.88370 0.94472 0.89248 0.85523 0.84817 0.90310 0.91622 0.91674 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.27 12.94 55.43 0.72 -23.55 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.50 29.55 -169.99 -5.02 15.47 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.78 8.68 -34.44 -0.30 -13.08 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.62 1.36 -155.66 -0.21 0.41 16 10 C 0.16 3.71 5.50 -4.04 -0.02 3.68 16 11 N -0.70 -13.55 5.47 -60.29 -0.33 -13.88 16 12 C 0.53 9.89 7.59 -10.98 -0.08 9.81 16 13 O -0.56 -11.93 13.10 5.56 0.07 -11.85 16 14 C -0.18 -2.57 6.19 -91.77 -0.57 -3.14 16 15 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 16 C -0.16 -1.95 9.88 -26.71 -0.26 -2.21 16 17 C -0.12 -1.53 5.95 -90.59 -0.54 -2.07 16 18 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.10 1.41 5.33 -3.82 -0.02 1.39 16 20 N -0.86 -9.91 9.62 -10.36 -0.10 -10.01 16 21 C -0.21 -4.33 9.96 -26.69 -0.27 -4.59 16 22 C -0.15 -3.37 9.45 -26.69 -0.25 -3.62 16 23 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 24 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 25 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.40 7.09 8.42 -40.82 -0.34 6.75 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.37 8.03 -51.93 -0.42 0.95 16 29 H 0.04 0.60 7.30 -51.93 -0.38 0.22 16 30 H 0.09 1.51 6.92 -51.93 -0.36 1.15 16 31 H 0.33 3.28 8.99 -39.29 -0.35 2.93 16 32 H 0.34 3.49 9.08 -39.29 -0.36 3.14 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -28.82 305.39 -8.24 -37.06 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.56 Total: 13.73 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.62 Total: -11.57 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.29 Total: -47.44 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.82 -8.24 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715100930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.602 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds