Wall clock time and date at job start Sun Mar 29 2020 22:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48504 * 109.46838 * 240.00145 * 3 2 1 5 5 H 1.48504 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47469 * 120.00174 * 3 2 1 7 7 C 1.37880 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 186.73697 * 7 2 1 9 9 C 1.50699 * 119.99960 * 6.46453 * 7 2 1 10 10 C 1.53001 * 115.55319 * 275.13208 * 9 7 2 11 11 N 1.46502 * 109.46464 * 294.83339 * 10 9 7 12 12 C 1.34777 * 119.99444 * 177.47047 * 11 10 9 13 13 O 1.21277 * 120.00180 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99768 * 179.97438 * 12 11 10 15 15 H 1.08996 * 115.55006 * 325.66101 * 14 12 11 16 16 C 1.52997 * 117.50139 * 111.37645 * 14 12 11 17 17 C 1.52998 * 117.49730 * 180.02562 * 14 12 11 18 18 H 1.09001 * 117.49879 * 145.01882 * 17 14 12 19 19 C 1.53007 * 117.50047 * 0.02562 * 17 14 12 20 20 N 1.46903 * 109.47122 * 175.00209 * 19 17 14 21 21 C 1.53002 * 117.49849 * 129.45730 * 9 7 2 22 22 C 1.53008 * 117.49787 * 60.79836 * 9 7 2 23 23 H 0.97001 * 120.00055 * 5.02645 * 1 2 3 24 24 H 1.08999 * 109.47007 * 54.82799 * 10 9 7 25 25 H 1.08993 * 109.47231 * 174.82856 * 10 9 7 26 26 H 0.96993 * 120.00606 * 357.46238 * 11 10 9 27 27 H 1.08993 * 117.50018 * 214.97775 * 16 14 12 28 28 H 1.09005 * 117.49648 * 0.02562 * 16 14 12 29 29 H 1.09006 * 109.47014 * 295.00076 * 19 17 14 30 30 H 1.09001 * 109.47030 * 55.00318 * 19 17 14 31 31 H 1.00899 * 110.99804 * 56.04398 * 20 19 17 32 32 H 1.00894 * 110.99880 * 179.97438 * 20 19 17 33 33 H 1.08998 * 117.50007 * 0.02562 * 21 9 7 34 34 H 1.08994 * 117.49656 * 145.01981 * 21 9 7 35 35 H 1.08990 * 117.49862 * 214.97963 * 22 9 7 36 36 H 1.09000 * 117.49973 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2582 -2.4951 -0.1458 10 6 0.6907 -3.0797 1.1492 11 7 1.7921 -3.4496 2.0416 12 6 1.5290 -3.9411 3.2687 13 8 0.3807 -4.0767 3.6342 14 6 2.6620 -4.3222 4.1865 15 1 3.5456 -4.7321 3.6975 16 6 2.8787 -3.4647 5.4350 17 6 2.2981 -4.8747 5.5661 18 1 2.9429 -5.6475 5.9848 19 6 0.8119 -4.9987 5.9080 20 7 0.6630 -5.6539 7.2144 21 6 1.7551 -3.4790 -1.2069 22 6 0.4522 -2.7067 -1.4291 23 1 -0.4850 0.8368 -0.0736 24 1 0.0610 -2.3363 1.6381 25 1 0.0969 -3.9641 0.9190 26 1 2.7106 -3.3409 1.7494 27 1 3.9052 -3.3102 5.7674 28 1 2.2016 -2.6252 5.5927 29 1 0.3638 -4.0058 5.9463 30 1 0.3118 -5.5939 5.1440 31 1 1.1725 -5.1558 7.9288 32 1 -0.3103 -5.7472 7.4632 33 1 2.6220 -3.1856 -1.7988 34 1 1.6774 -4.5428 -0.9825 35 1 -0.4819 -3.2627 -1.3507 36 1 0.4615 -1.9047 -2.1672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715100930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:54 Heat of formation + Delta-G solvation = -15.786942 kcal Electronic energy + Delta-G solvation = -16979.703912 eV Core-core repulsion = 14271.109559 eV Total energy + Delta-G solvation = -2708.594353 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07122 -38.81742 -37.59276 -34.96326 -34.29068 -33.97024 -28.61547 -27.39492 -26.18733 -24.43048 -22.96533 -21.85008 -21.34826 -20.59846 -18.29433 -17.92062 -16.90808 -16.70734 -16.40037 -16.17154 -15.88897 -15.48617 -14.80422 -14.52235 -14.46709 -13.86388 -13.62883 -13.44699 -13.41046 -12.99499 -12.77572 -12.39931 -12.28170 -12.05292 -11.52321 -11.34419 -11.18728 -10.83874 -10.66866 -10.45250 -10.03982 -9.82692 -9.59964 -8.12052 -6.24788 1.42843 1.43765 1.50613 1.61332 2.33099 2.43064 2.86679 3.17512 3.43332 3.48253 3.87664 3.91694 4.13801 4.20568 4.27115 4.44335 4.54075 4.63993 4.69623 4.73138 4.85173 4.94265 4.97746 4.99530 5.08426 5.25518 5.36292 5.57088 5.59774 5.69171 5.76991 6.20895 6.35032 6.62408 6.78919 6.84187 7.41616 7.45531 8.96306 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.006151 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.116065 B = 4550.742730 C = 5011.346300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.002 3.998 10 C 0.181 3.819 11 N -0.696 5.696 12 C 0.524 3.476 13 O -0.591 6.591 14 C -0.190 4.190 15 H 0.154 0.846 16 C -0.141 4.141 17 C -0.112 4.112 18 H 0.140 0.860 19 C 0.105 3.895 20 N -0.850 5.850 21 C -0.174 4.174 22 C -0.161 4.161 23 H 0.258 0.742 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.410 0.590 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.059 0.941 31 H 0.347 0.653 32 H 0.347 0.653 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 -7.672 8.920 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.056 3.944 11 N -0.344 5.344 12 C 0.312 3.688 13 O -0.473 6.473 14 C -0.211 4.211 15 H 0.171 0.829 16 C -0.179 4.179 17 C -0.131 4.131 18 H 0.158 0.842 19 C -0.026 4.026 20 N -0.381 5.381 21 C -0.211 4.211 22 C -0.199 4.199 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.245 0.755 27 H 0.156 0.844 28 H 0.096 0.904 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.797 -8.247 8.853 13.878 hybrid contribution -0.353 2.202 -0.317 2.252 sum 6.444 -6.045 8.536 12.285 Atomic orbital electron populations 1.70135 1.07323 1.27477 1.49737 1.25700 0.95402 1.02111 0.94450 0.85771 0.78414 0.79463 0.78930 1.19369 1.21827 1.19610 1.20645 0.93015 0.89690 1.50620 0.91802 1.19089 0.99747 0.94596 0.86406 1.20534 0.88007 0.95337 0.90506 1.45827 1.10908 1.62856 1.14820 1.20423 0.89868 0.76481 0.82028 1.90623 1.24264 1.56802 1.75609 1.22342 0.99794 1.08733 0.90235 0.82872 1.23192 1.03985 0.93704 0.96988 1.22406 0.97044 0.97896 0.95747 0.84220 1.21191 0.94137 0.96063 0.91196 1.58799 1.17678 1.57321 1.04279 1.23009 0.97285 0.96232 1.04599 1.22433 0.93885 1.01500 1.02070 0.93273 0.95461 0.94873 0.75465 0.84424 0.90375 0.97124 0.92216 0.84035 0.84081 0.89399 0.89230 0.91220 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 12.94 21.45 0.28 -51.51 16 2 C 0.02 1.27 5.39 84.66 0.46 1.72 16 3 Si 0.95 42.07 29.55 68.60 2.03 44.10 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.50 -25.55 8.68 25.60 0.22 -25.33 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.00 0.11 1.36 -52.92 -0.07 0.04 16 10 C 0.18 8.35 5.50 86.38 0.48 8.83 16 11 N -0.70 -26.74 5.47 -463.06 -2.53 -29.27 16 12 C 0.52 19.37 7.59 87.66 0.67 20.03 16 13 O -0.59 -26.15 13.10 -3.02 -0.04 -26.19 16 14 C -0.19 -4.91 6.19 -11.54 -0.07 -4.98 16 15 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.14 -3.15 9.88 30.61 0.30 -2.85 16 17 C -0.11 -2.63 5.95 -10.78 -0.06 -2.69 16 18 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 19 C 0.10 2.97 5.33 86.31 0.46 3.43 16 20 N -0.85 -18.50 9.62 -186.69 -1.80 -20.30 16 21 C -0.17 -6.83 9.96 30.62 0.30 -6.53 16 22 C -0.16 -7.30 9.45 30.62 0.29 -7.01 16 23 H 0.26 14.25 8.32 -92.71 -0.77 13.47 16 24 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.51 8.09 -2.39 -0.02 1.50 16 26 H 0.41 13.92 8.42 -92.71 -0.78 13.14 16 27 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.09 8.03 -2.38 -0.02 2.07 16 29 H 0.01 0.35 7.30 -2.38 -0.02 0.33 16 30 H 0.06 2.06 6.92 -2.39 -0.02 2.04 16 31 H 0.35 6.09 8.99 -89.69 -0.81 5.29 16 32 H 0.35 6.83 9.08 -89.70 -0.81 6.01 16 33 H 0.09 3.30 8.14 -2.39 -0.02 3.29 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -63.63 305.39 -0.40 -64.02 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -1.30 Total: 34.48 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 2.97 Total: -15.33 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.05 Total: -101.08 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -63.63 -0.40 -64.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715100930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.238 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds