Wall clock time and date at job start Sun Mar 29 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00026 * 2 1 4 4 C 1.46904 * 110.99932 * 123.94603 * 2 1 3 5 5 C 1.50700 * 109.47192 * 170.00207 * 4 2 1 6 6 O 1.21303 * 119.99816 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.28082 * 5 4 2 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 H 1.08993 * 109.47654 * 296.04947 * 1 2 3 22 22 H 1.09009 * 109.47069 * 56.05452 * 1 2 3 23 23 H 1.09006 * 109.47371 * 176.04534 * 1 2 3 24 24 H 1.09002 * 109.47259 * 183.95329 * 3 2 1 25 25 H 1.09002 * 109.47005 * 303.95034 * 3 2 1 26 26 H 1.08997 * 109.47311 * 63.94444 * 3 2 1 27 27 H 1.09009 * 109.46542 * 50.00238 * 4 2 1 28 28 H 1.08998 * 109.47050 * 290.00772 * 4 2 1 29 29 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 30 30 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 31 31 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 32 32 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.4817 -0.9524 0.9731 6 8 4.0470 -0.4921 0.0035 7 7 4.1820 -1.6350 1.9005 8 6 5.5677 -1.8139 1.7440 9 6 6.3479 -1.3434 0.6724 10 7 7.5902 -1.7014 0.8777 11 7 7.6508 -2.4194 2.0789 12 6 8.7791 -2.9688 2.6364 13 1 8.7131 -3.5058 3.5711 14 6 10.0061 -2.8340 1.9977 15 7 10.0865 -2.1808 0.8616 16 14 11.5411 -3.5807 2.7563 17 1 11.3643 -5.0494 2.8871 18 1 12.7110 -3.2980 1.8864 19 1 11.7684 -2.9881 4.0988 20 6 6.3893 -2.4758 2.5970 21 1 -0.3634 0.4512 0.9232 22 1 -0.3634 0.5739 -0.8526 23 1 -0.3634 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 1.7042 1.8724 0.9232 27 1 1.5088 -1.7406 1.1758 28 1 1.7973 -0.2246 2.0628 29 1 3.7300 -2.0027 2.6760 30 1 5.9843 -0.7804 -0.1744 31 1 10.9430 -2.0863 0.4159 32 1 6.0983 -2.9590 3.5180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727375925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:30 Heat of formation + Delta-G solvation = 63.367349 kcal Electronic energy + Delta-G solvation = -16515.579426 eV Core-core repulsion = 13706.877117 eV Total energy + Delta-G solvation = -2808.702309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.91092 -38.79087 -36.50175 -34.09499 -33.10437 -30.25908 -28.98583 -27.51849 -27.15807 -24.75524 -22.51148 -20.93774 -20.03453 -19.34718 -17.50260 -16.49835 -15.69176 -15.55119 -15.40730 -14.70710 -14.38024 -14.16558 -13.81863 -13.17630 -12.90953 -12.64575 -12.40220 -12.00132 -11.66234 -11.61562 -11.54269 -11.34627 -11.18944 -10.91164 -10.53748 -10.04392 -9.11556 -9.08175 -8.76009 -8.29359 -8.01462 -6.64608 -6.52056 -4.19047 2.89521 3.06548 3.08713 3.10767 3.47290 3.72129 3.87239 4.17752 4.47119 4.78301 5.05235 5.07548 5.14181 5.28788 5.32696 5.39514 5.62084 5.63225 5.73187 6.22566 6.28522 6.49960 6.83803 6.96507 7.01808 7.03990 7.20062 7.30153 7.89886 8.25350 8.34335 8.69139 8.95433 9.42177 9.71719 10.43978 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.081441 B = 0.004642 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.725122 B = 6030.690169 C = 6281.562182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.529 5.529 3 C 0.018 3.982 4 C 0.040 3.960 5 C 0.498 3.502 6 O -0.519 6.519 7 N -0.628 5.628 8 C -0.058 4.058 9 C -0.033 4.033 10 N -0.261 5.261 11 N -0.144 5.144 12 C -0.325 4.325 13 H 0.115 0.885 14 C 0.046 3.954 15 N -0.771 5.771 16 Si 0.934 3.066 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.085 4.085 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.395 0.605 30 H 0.176 0.824 31 H 0.275 0.725 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 1.572 3.746 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.253 5.253 3 C -0.130 4.130 4 C -0.091 4.091 5 C 0.283 3.717 6 O -0.394 6.394 7 N -0.272 5.272 8 C -0.163 4.163 9 C -0.209 4.209 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.457 4.457 13 H 0.133 0.867 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.236 4.236 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.193 0.807 31 H 0.086 0.914 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.561 1.795 1.965 11.864 hybrid contribution -0.811 -0.228 1.943 2.118 sum -12.373 1.567 3.908 13.069 Atomic orbital electron populations 1.22415 0.87174 1.02219 1.00461 1.61598 1.07087 1.14845 1.41751 1.22591 1.03611 0.87338 0.99453 1.21941 0.93744 1.00262 0.93181 1.20221 0.88465 0.79760 0.83229 1.90559 1.70462 1.48498 1.29908 1.42514 1.06582 1.53913 1.24161 1.17281 0.82548 1.15102 1.01408 1.24114 0.90669 1.05937 1.00179 1.78247 1.16751 1.14566 0.99649 1.44530 1.04056 1.29768 1.12793 1.19810 0.83601 1.34753 1.07518 0.86729 1.25628 0.99766 0.96150 0.95515 1.70211 1.26218 1.30706 1.12599 0.85904 0.79551 0.79591 0.79133 1.19184 1.20148 1.19208 1.21254 0.86298 1.13516 1.02550 0.95839 0.91139 0.91366 0.88797 0.91642 0.96374 0.88253 0.92354 0.77206 0.80716 0.91446 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.57 60.06 0.57 0.82 16 2 N -0.53 -7.05 4.76 -252.71 -1.20 -8.26 16 3 C 0.02 0.24 9.21 60.07 0.55 0.79 16 4 C 0.04 0.51 5.45 -4.97 -0.03 0.48 16 5 C 0.50 8.79 7.53 -10.98 -0.08 8.71 16 6 O -0.52 -11.26 11.46 5.54 0.06 -11.20 16 7 N -0.63 -11.21 5.47 -10.00 -0.05 -11.26 16 8 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 9 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 10 N -0.26 -7.73 10.40 30.80 0.32 -7.41 16 11 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 12 C -0.32 -8.70 10.25 -14.82 -0.15 -8.85 16 13 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 14 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 15 N -0.77 -21.83 11.81 55.49 0.66 -21.17 16 16 Si 0.93 19.09 29.55 -169.99 -5.02 14.07 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.09 -2.03 11.49 -16.39 -0.19 -2.22 16 21 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 0.62 8.12 -51.92 -0.42 0.20 16 23 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 24 H 0.09 1.54 5.88 -51.93 -0.31 1.23 16 25 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 1.03 8.06 -51.92 -0.42 0.61 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.40 5.33 8.83 -40.82 -0.36 4.97 16 30 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -33.90 276.90 -5.19 -39.08 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.90 Total: 8.19 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.18 Total: -2.18 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.32 Total: -52.14 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.06 Total: -11.20 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.90 -5.19 -39.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727375925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.452 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds