Wall clock time and date at job start Sun Mar 29 2020 21:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00026 * 2 1 4 4 C 1.46904 * 110.99932 * 123.94603 * 2 1 3 5 5 C 1.50700 * 109.47192 * 170.00207 * 4 2 1 6 6 O 1.21303 * 119.99816 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.28082 * 5 4 2 8 8 C 1.40595 * 119.99527 * 179.72943 * 7 5 4 9 9 C 1.40649 * 126.08553 * 359.68015 * 8 7 5 10 10 N 1.30903 * 108.38945 * 179.87998 * 9 8 7 11 11 N 1.40074 * 108.40705 * 0.38914 * 10 9 8 12 12 C 1.37320 * 126.07077 * 179.73305 * 11 10 9 13 13 H 1.07999 * 120.00028 * 180.02562 * 12 11 10 14 14 C 1.38983 * 120.00055 * 0.02562 * 12 11 10 15 15 N 1.31296 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47091 * 60.00391 * 16 14 12 18 18 H 1.48503 * 109.47066 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47397 * 300.00434 * 16 14 12 20 20 C 1.35679 * 126.07814 * 179.97438 * 8 7 5 21 21 H 1.08993 * 109.47654 * 296.04947 * 1 2 3 22 22 H 1.09009 * 109.47069 * 56.05452 * 1 2 3 23 23 H 1.09006 * 109.47371 * 176.04534 * 1 2 3 24 24 H 1.09002 * 109.47259 * 183.95329 * 3 2 1 25 25 H 1.09002 * 109.47005 * 303.95034 * 3 2 1 26 26 H 1.08997 * 109.47311 * 63.94444 * 3 2 1 27 27 H 1.09009 * 109.46542 * 50.00238 * 4 2 1 28 28 H 1.08998 * 109.47050 * 290.00772 * 4 2 1 29 29 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 30 30 H 1.07999 * 125.80209 * 0.02562 * 9 8 7 31 31 H 0.97004 * 120.00252 * 179.97438 * 15 14 12 32 32 H 1.07996 * 126.24944 * 359.92772 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.4817 -0.9524 0.9731 6 8 4.0470 -0.4921 0.0035 7 7 4.1820 -1.6350 1.9005 8 6 5.5677 -1.8139 1.7440 9 6 6.3479 -1.3434 0.6724 10 7 7.5902 -1.7014 0.8777 11 7 7.6508 -2.4194 2.0789 12 6 8.7791 -2.9688 2.6364 13 1 8.7131 -3.5058 3.5711 14 6 10.0061 -2.8340 1.9977 15 7 10.0865 -2.1808 0.8616 16 14 11.5411 -3.5807 2.7563 17 1 11.3643 -5.0494 2.8871 18 1 12.7110 -3.2980 1.8864 19 1 11.7684 -2.9881 4.0988 20 6 6.3893 -2.4758 2.5970 21 1 -0.3634 0.4512 0.9232 22 1 -0.3634 0.5739 -0.8526 23 1 -0.3634 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 1.7042 1.8724 0.9232 27 1 1.5088 -1.7406 1.1758 28 1 1.7973 -0.2246 2.0628 29 1 3.7300 -2.0027 2.6760 30 1 5.9843 -0.7804 -0.1744 31 1 10.9430 -2.0863 0.4159 32 1 6.0983 -2.9590 3.5180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727375925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:30 Heat of formation + Delta-G solvation = 36.685823 kcal Electronic energy + Delta-G solvation = -16516.736423 eV Core-core repulsion = 13706.877117 eV Total energy + Delta-G solvation = -2809.859306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68022 -40.35965 -37.60810 -35.81576 -34.91967 -32.25319 -30.43405 -28.74847 -28.38394 -26.64910 -23.65856 -22.79248 -21.55067 -21.13531 -19.30250 -17.91771 -17.37449 -17.04679 -16.70736 -16.02830 -15.68143 -15.55099 -15.35903 -14.95905 -14.76651 -13.92868 -13.45652 -13.27771 -13.21390 -12.97182 -12.84926 -12.77859 -12.61977 -12.45162 -12.12947 -11.71454 -10.96162 -10.80609 -10.52360 -10.08035 -9.24569 -8.48461 -8.45170 -6.22518 1.26135 1.40470 1.57133 1.58518 1.90495 2.05860 2.28902 2.56193 2.91923 3.10665 3.17242 3.95686 4.23294 4.37234 4.42537 4.46875 4.52783 4.64185 4.73474 4.76467 5.01700 5.07057 5.11433 5.14598 5.31951 5.55569 5.94526 5.98545 6.14116 6.35896 6.76367 6.85839 7.47065 7.53036 7.71701 8.54202 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.081441 B = 0.004642 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.725122 B = 6030.690169 C = 6281.562182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.558 5.558 3 C 0.022 3.978 4 C 0.052 3.948 5 C 0.492 3.508 6 O -0.563 6.563 7 N -0.620 5.620 8 C -0.042 4.042 9 C -0.061 4.061 10 N -0.312 5.312 11 N -0.169 5.169 12 C -0.357 4.357 13 H 0.141 0.859 14 C -0.007 4.007 15 N -0.827 5.827 16 Si 1.020 2.980 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.253 1.253 20 C -0.082 4.082 21 H 0.040 0.960 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.420 0.580 30 H 0.165 0.835 31 H 0.276 0.724 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 0.530 6.014 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.283 5.283 3 C -0.126 4.126 4 C -0.079 4.079 5 C 0.280 3.720 6 O -0.442 6.442 7 N -0.266 5.266 8 C -0.149 4.149 9 C -0.236 4.236 10 N -0.145 5.145 11 N 0.061 4.939 12 C -0.488 4.488 13 H 0.159 0.841 14 C -0.218 4.218 15 N -0.455 5.455 16 Si 0.839 3.161 17 H -0.177 1.177 18 H -0.204 1.204 19 H -0.177 1.177 20 C -0.232 4.232 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.149 0.851 28 H 0.107 0.893 29 H 0.257 0.743 30 H 0.182 0.818 31 H 0.085 0.915 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.448 0.746 4.270 14.130 hybrid contribution -0.436 0.147 1.209 1.293 sum -13.884 0.893 5.479 14.953 Atomic orbital electron populations 1.22464 0.84509 1.03410 1.01581 1.61545 1.09480 1.14661 1.42614 1.22457 1.01184 0.88151 1.00793 1.21949 0.89327 1.02320 0.94278 1.21354 0.90657 0.77996 0.81990 1.90560 1.71899 1.49887 1.31805 1.42487 1.04314 1.54278 1.25522 1.17371 0.85062 1.12912 0.99526 1.24140 0.91109 1.07027 1.01373 1.78138 1.18337 1.16354 1.01631 1.44831 1.05670 1.30562 1.12804 1.20593 0.84020 1.35425 1.08718 0.84138 1.26892 1.03404 0.95953 0.95581 1.70405 1.27175 1.33058 1.14828 0.84643 0.74105 0.79078 0.78297 1.17688 1.20364 1.17696 1.22015 0.85041 1.12589 1.03584 0.94107 0.90693 0.90071 0.92707 0.90672 0.94717 0.85123 0.89321 0.74290 0.81800 0.91456 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.57 127.69 1.22 1.65 16 2 N -0.56 -13.58 4.76 -953.45 -4.54 -18.12 16 3 C 0.02 0.56 9.21 127.69 1.18 1.74 16 4 C 0.05 1.14 5.45 85.56 0.47 1.61 16 5 C 0.49 16.78 7.53 87.66 0.66 17.44 16 6 O -0.56 -25.03 11.46 -3.10 -0.04 -25.07 16 7 N -0.62 -20.95 5.47 -303.92 -1.66 -22.61 16 8 C -0.04 -1.97 6.90 37.73 0.26 -1.71 16 9 C -0.06 -3.43 10.85 85.42 0.93 -2.50 16 10 N -0.31 -19.30 10.40 -56.47 -0.59 -19.89 16 11 N -0.17 -9.57 3.74 -190.02 -0.71 -10.28 16 12 C -0.36 -19.14 10.25 84.01 0.86 -18.28 16 13 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 14 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 15 N -0.83 -48.61 11.81 21.66 0.26 -48.36 16 16 Si 1.02 38.97 29.55 68.60 2.03 41.00 16 17 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 18 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 20 C -0.08 -3.83 11.49 83.37 0.96 -2.87 16 21 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16 23 H 0.08 1.06 8.12 -2.38 -0.02 1.04 16 24 H 0.05 1.83 5.88 -2.39 -0.01 1.82 16 25 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 26 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.13 2.09 8.06 -2.38 -0.02 2.07 16 28 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 29 H 0.42 9.87 8.83 -92.71 -0.82 9.05 16 30 H 0.17 9.36 5.92 -2.91 -0.02 9.34 16 31 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.19 6.82 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -78.50 276.90 2.07 -76.43 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.32 Total: 29.72 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 7.00 Total: -2.82 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -7.24 Total: -119.25 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -78.50 2.07 -76.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727375925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.113 kcal (2) G-P(sol) polarization free energy of solvation -78.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds