Wall clock time and date at job start Sun Mar 29 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47328 * 180.02562 * 14 12 11 16 16 C 1.53787 * 113.60776 * 274.13352 * 15 14 12 17 17 C 1.53956 * 87.01520 * 220.04836 * 16 15 14 18 18 C 1.53779 * 87.11416 * 25.36410 * 17 16 15 19 19 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 20 20 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 21 21 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 23 23 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 24 24 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 25 25 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 26 26 H 1.08996 * 112.85061 * 45.32705 * 15 14 12 27 27 H 1.08994 * 113.61897 * 334.56775 * 16 15 14 28 28 H 1.08998 * 113.61469 * 105.47662 * 16 15 14 29 29 H 1.09006 * 113.53648 * 270.80967 * 17 16 15 30 30 H 1.08999 * 113.66769 * 139.93390 * 17 16 15 31 31 H 1.09003 * 113.61563 * 220.08927 * 18 17 16 32 32 H 1.09000 * 113.68793 * 89.19965 * 18 17 16 33 33 H 1.08998 * 117.50651 * 0.02562 * 19 9 7 34 34 H 1.09007 * 117.49575 * 145.02284 * 19 9 7 35 35 H 1.09004 * 117.50100 * 214.97609 * 20 9 7 36 36 H 1.09000 * 117.49932 * 359.97275 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 6 1.9180 -4.9654 5.4495 16 6 1.5419 -3.8978 6.4906 17 6 2.0506 -4.8791 7.5623 18 6 2.9435 -5.4889 6.4688 19 6 1.7506 -3.4762 -1.2120 20 6 0.4464 -2.7040 -1.4262 21 1 -0.4851 0.8400 0.0004 22 1 0.0687 -2.3413 1.6431 23 1 0.1035 -3.9677 0.9206 24 1 3.1884 -5.1435 3.7191 25 1 3.1534 -3.5168 4.4410 26 1 1.1143 -5.6704 5.2372 27 1 2.1356 -2.9868 6.4159 28 1 0.4711 -3.7028 6.5489 29 1 1.2823 -5.5601 7.9287 30 1 2.6098 -4.3989 8.3652 31 1 3.0026 -6.5766 6.5095 32 1 3.9216 -5.0147 6.3872 33 1 2.6146 -3.1810 -1.8073 34 1 1.6745 -4.5406 -0.9896 35 1 -0.4872 -3.2607 -1.3448 36 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:29 Heat of formation + Delta-G solvation = -57.012517 kcal Electronic energy + Delta-G solvation = -16913.984362 eV Core-core repulsion = 14171.309583 eV Total energy + Delta-G solvation = -2742.674779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95026 -38.49221 -36.68043 -35.13166 -31.95891 -30.68348 -26.83359 -25.62021 -25.28375 -23.64559 -21.19270 -20.16516 -19.35248 -19.22911 -16.88128 -16.52291 -15.80398 -15.64949 -14.97160 -14.58225 -14.50605 -13.82102 -13.47322 -12.86352 -12.46786 -12.25694 -12.03080 -11.74549 -11.54563 -11.39075 -10.97020 -10.84982 -10.66585 -10.54997 -10.34681 -10.28587 -10.21010 -9.91898 -9.79953 -9.50235 -8.82214 -8.46447 -8.19999 -6.06497 -4.11805 2.85168 3.30114 3.35088 3.37519 3.42339 4.39185 4.59076 4.61204 4.72117 4.84935 5.18670 5.23632 5.33082 5.47123 5.59671 5.64780 5.70304 5.77655 5.82992 5.92991 6.00835 6.09102 6.22874 6.27476 6.35014 6.49759 6.55319 6.68201 6.74583 7.03238 7.31474 7.37540 7.49770 7.86517 8.37654 8.52270 8.89493 9.53878 11.03003 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026970 B = 0.005911 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.938583 B = 4735.414183 C = 5293.457379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.340 6.340 12 C 0.452 3.548 13 O -0.524 6.524 14 C -0.106 4.106 15 C -0.099 4.099 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.205 4.205 20 C -0.146 4.146 21 H 0.262 0.738 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -8.572 9.588 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.043 3.957 11 O -0.256 6.256 12 C 0.295 3.705 13 O -0.414 6.414 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.174 4.174 17 C -0.180 4.180 18 C -0.173 4.173 19 C -0.242 4.242 20 C -0.184 4.184 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.207 -8.460 9.622 13.485 hybrid contribution 0.160 0.974 -0.098 0.992 sum 4.368 -7.486 9.524 12.877 Atomic orbital electron populations 1.69988 1.05919 1.26817 1.49142 1.25014 0.94849 0.99064 0.94512 0.86649 0.79642 0.82927 0.78753 1.20109 1.21268 1.20158 1.20344 0.93035 0.88360 1.51001 0.91936 1.18785 0.98828 0.94189 0.84551 1.22852 0.85928 0.96876 0.90037 1.86518 1.41538 1.71079 1.26419 1.23609 0.90013 0.74511 0.82334 1.90596 1.21692 1.52204 1.76950 1.21389 0.96407 1.03047 0.93537 1.22411 0.98629 0.98874 0.91816 1.23003 1.01889 0.97083 0.95438 1.22822 0.99451 0.99060 0.96626 1.22965 0.97937 1.00493 0.95934 1.23000 0.98384 0.95696 1.07158 1.22541 0.92464 1.01262 1.02083 0.92844 0.90673 0.94476 0.88095 0.87926 0.88296 0.90094 0.91146 0.90346 0.91574 0.91471 0.89900 0.90075 0.91572 0.91662 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 12.93 55.43 0.72 -24.38 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -13.45 8.77 -34.44 -0.30 -13.76 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.93 1.61 -155.66 -0.25 0.68 16 10 C 0.12 2.82 5.29 37.15 0.20 3.02 16 11 O -0.34 -7.59 10.16 -39.25 -0.40 -7.99 16 12 C 0.45 8.71 7.96 36.01 0.29 9.00 16 13 O -0.52 -11.32 15.54 -18.76 -0.29 -11.61 16 14 C -0.11 -1.45 5.63 -27.88 -0.16 -1.61 16 15 C -0.10 -1.22 3.11 -89.80 -0.28 -1.50 16 16 C -0.14 -1.65 7.65 -25.82 -0.20 -1.85 16 17 C -0.14 -1.37 8.09 -25.83 -0.21 -1.58 16 18 C -0.14 -1.29 7.65 -25.92 -0.20 -1.49 16 19 C -0.21 -4.52 9.96 -26.70 -0.27 -4.78 16 20 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.07 2.02 8.13 -51.93 -0.42 1.59 16 23 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.10 1.30 7.88 -51.93 -0.41 0.89 16 26 H 0.10 1.33 7.73 -51.93 -0.40 0.93 16 27 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -29.92 307.26 -7.92 -37.85 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.83 Total: 1.14 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.72 Total: -15.75 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.72 Total: -24.38 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.69 Total: -19.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.92 -7.92 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.164 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds