Wall clock time and date at job start Sun Mar 29 2020 22:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47328 * 180.02562 * 14 12 11 16 16 C 1.53787 * 113.60776 * 274.13352 * 15 14 12 17 17 C 1.53956 * 87.01520 * 220.04836 * 16 15 14 18 18 C 1.53779 * 87.11416 * 25.36410 * 17 16 15 19 19 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 20 20 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 21 21 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 23 23 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 24 24 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 25 25 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 26 26 H 1.08996 * 112.85061 * 45.32705 * 15 14 12 27 27 H 1.08994 * 113.61897 * 334.56775 * 16 15 14 28 28 H 1.08998 * 113.61469 * 105.47662 * 16 15 14 29 29 H 1.09006 * 113.53648 * 270.80967 * 17 16 15 30 30 H 1.08999 * 113.66769 * 139.93390 * 17 16 15 31 31 H 1.09003 * 113.61563 * 220.08927 * 18 17 16 32 32 H 1.09000 * 113.68793 * 89.19965 * 18 17 16 33 33 H 1.08998 * 117.50651 * 0.02562 * 19 9 7 34 34 H 1.09007 * 117.49575 * 145.02284 * 19 9 7 35 35 H 1.09004 * 117.50100 * 214.97609 * 20 9 7 36 36 H 1.09000 * 117.49932 * 359.97275 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 6 1.9180 -4.9654 5.4495 16 6 1.5419 -3.8978 6.4906 17 6 2.0506 -4.8791 7.5623 18 6 2.9435 -5.4889 6.4688 19 6 1.7506 -3.4762 -1.2120 20 6 0.4464 -2.7040 -1.4262 21 1 -0.4851 0.8400 0.0004 22 1 0.0687 -2.3413 1.6431 23 1 0.1035 -3.9677 0.9206 24 1 3.1884 -5.1435 3.7191 25 1 3.1534 -3.5168 4.4410 26 1 1.1143 -5.6704 5.2372 27 1 2.1356 -2.9868 6.4159 28 1 0.4711 -3.7028 6.5489 29 1 1.2823 -5.5601 7.9287 30 1 2.6098 -4.3989 8.3652 31 1 3.0026 -6.5766 6.5095 32 1 3.9216 -5.0147 6.3872 33 1 2.6146 -3.1810 -1.8073 34 1 1.6745 -4.5406 -0.9896 35 1 -0.4872 -3.2607 -1.3448 36 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:28 Heat of formation + Delta-G solvation = -72.029027 kcal Electronic energy + Delta-G solvation = -16914.635526 eV Core-core repulsion = 14171.309583 eV Total energy + Delta-G solvation = -2743.325944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46056 -39.59233 -38.45969 -36.87233 -34.03816 -31.85261 -28.64046 -27.31977 -26.45685 -24.77111 -23.00359 -21.60867 -21.19849 -20.26523 -18.52930 -18.27837 -17.41129 -17.13441 -16.62863 -16.19251 -15.54744 -15.43905 -15.01921 -14.39845 -13.85724 -13.60839 -13.55332 -13.28593 -12.96013 -12.82643 -12.72008 -12.41667 -12.38876 -12.10553 -11.68834 -11.65463 -11.56602 -11.34283 -11.12307 -11.06492 -10.79223 -10.49897 -10.09237 -8.14872 -6.26471 1.30844 1.42089 1.43072 1.50926 1.89586 2.41671 3.14093 3.40342 3.64262 3.71760 3.81039 3.98399 4.02951 4.13694 4.36451 4.42750 4.49082 4.52844 4.64997 4.65990 4.84934 4.89718 4.92458 4.95094 5.00185 5.12161 5.16434 5.17322 5.37471 5.45538 5.56712 5.62689 5.73038 5.77398 6.34463 6.78819 6.89113 7.42413 8.94091 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026970 B = 0.005911 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.938583 B = 4735.414183 C = 5293.457379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.001 3.999 10 C 0.129 3.871 11 O -0.351 6.351 12 C 0.445 3.555 13 O -0.553 6.553 14 C -0.097 4.097 15 C -0.107 4.107 16 C -0.150 4.150 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.176 4.176 20 C -0.148 4.148 21 H 0.261 0.739 22 H 0.036 0.964 23 H 0.045 0.955 24 H 0.130 0.870 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -9.394 10.328 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.001 3.999 10 C 0.055 3.945 11 O -0.267 6.267 12 C 0.290 3.710 13 O -0.445 6.445 14 C -0.134 4.134 15 C -0.125 4.125 16 C -0.187 4.187 17 C -0.171 4.171 18 C -0.157 4.157 19 C -0.213 4.213 20 C -0.186 4.186 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.148 0.852 25 H 0.136 0.864 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.203 -9.296 10.367 15.243 hybrid contribution -0.484 1.192 -0.295 1.320 sum 5.719 -8.104 10.071 14.135 Atomic orbital electron populations 1.70105 1.07252 1.27424 1.50158 1.25750 0.95597 1.02260 0.94223 0.85684 0.78463 0.78932 0.79034 1.19179 1.21085 1.19702 1.20608 0.92959 0.89781 1.50881 0.92537 1.18908 1.00549 0.94890 0.85554 1.22443 0.86101 0.96018 0.89907 1.86530 1.40830 1.71722 1.27621 1.24824 0.91169 0.73168 0.81796 1.90581 1.23442 1.53269 1.77176 1.21607 0.94879 1.04388 0.92514 1.22471 0.99513 0.98845 0.91698 1.23099 1.00635 0.97836 0.97178 1.22801 0.99569 0.98186 0.96540 1.22929 0.97627 1.01507 0.93597 1.23010 0.97471 0.96367 1.04436 1.22479 0.93847 1.01390 1.00845 0.92994 0.94516 0.93662 0.85247 0.86372 0.89924 0.89922 0.93462 0.89990 0.90029 0.89980 0.88299 0.89450 0.89088 0.90545 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.88 12.93 21.45 0.28 -52.60 16 2 C 0.02 1.21 5.39 84.65 0.46 1.66 16 3 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.50 -27.87 8.77 25.60 0.22 -27.65 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.07 1.61 -52.93 -0.08 -0.01 16 10 C 0.13 6.37 5.29 71.98 0.38 6.75 16 11 O -0.35 -15.66 10.16 -51.40 -0.52 -16.18 16 12 C 0.44 17.08 7.96 71.24 0.57 17.65 16 13 O -0.55 -24.39 15.54 21.94 0.34 -24.05 16 14 C -0.10 -2.47 5.63 29.85 0.17 -2.30 16 15 C -0.11 -2.47 3.11 -10.26 -0.03 -2.50 16 16 C -0.15 -3.51 7.65 31.18 0.24 -3.27 16 17 C -0.13 -2.25 8.09 31.18 0.25 -2.00 16 18 C -0.12 -1.87 7.65 31.12 0.24 -1.63 16 19 C -0.18 -7.47 9.96 30.62 0.30 -7.16 16 20 C -0.15 -6.93 9.43 30.62 0.29 -6.64 16 21 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 22 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 23 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 24 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.12 2.70 7.88 -2.39 -0.02 2.68 16 26 H 0.08 2.19 7.73 -2.39 -0.02 2.17 16 27 H 0.08 1.87 7.92 -2.39 -0.02 1.85 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 35 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 36 H 0.07 3.49 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -65.15 307.26 6.16 -58.98 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.04 Total: 15.48 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.00 Total: -27.09 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.28 Total: -52.60 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.18 Total: -40.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.15 6.16 -58.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.046 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds