Wall clock time and date at job start Sun Mar 29 2020 22:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 112.84956 * 2 1 4 4 O 1.20824 * 120.00371 * 236.28983 * 3 2 1 5 5 O 1.34236 * 119.99703 * 56.28716 * 3 2 1 6 6 C 1.45194 * 117.00046 * 185.00895 * 5 3 2 7 7 C 1.53004 * 109.47062 * 184.71554 * 6 5 3 8 8 C 1.50701 * 115.56000 * 91.44194 * 7 6 5 9 9 H 1.08008 * 119.99822 * 219.69736 * 8 7 6 10 10 C 1.37874 * 120.00281 * 39.68802 * 8 7 6 11 11 N 1.31513 * 120.00217 * 12.19614 * 10 8 7 12 12 Si 1.86796 * 120.00192 * 192.18686 * 10 8 7 13 13 H 1.48508 * 109.47150 * 90.00535 * 12 10 8 14 14 H 1.48500 * 109.47502 * 210.00164 * 12 10 8 15 15 H 1.48503 * 109.47618 * 330.00792 * 12 10 8 16 16 C 1.52993 * 117.49861 * 305.75147 * 7 6 5 17 17 C 1.52999 * 60.02920 * 252.49608 * 16 7 6 18 18 C 1.53775 * 113.61831 * 131.19791 * 2 1 3 19 19 C 1.53960 * 87.01990 * 89.22990 * 18 2 1 20 20 C 1.53776 * 87.10830 * 25.36511 * 19 18 2 21 21 H 1.08995 * 109.47237 * 65.06056 * 1 2 3 22 22 H 1.09001 * 109.46464 * 185.05922 * 1 2 3 23 23 H 1.08998 * 109.47312 * 305.05555 * 1 2 3 24 24 H 1.08995 * 109.47498 * 64.71433 * 6 5 3 25 25 H 1.09002 * 109.46964 * 304.71665 * 6 5 3 26 26 H 0.96996 * 120.00409 * 174.98295 * 11 10 8 27 27 H 1.08995 * 117.49921 * 359.97438 * 16 7 6 28 28 H 1.09004 * 117.49908 * 145.00242 * 16 7 6 29 29 H 1.09003 * 117.49749 * 107.50384 * 17 16 7 30 30 H 1.09001 * 117.50362 * 252.51881 * 17 16 7 31 31 H 1.08996 * 113.61911 * 203.74709 * 18 2 1 32 32 H 1.09000 * 113.61582 * 334.65634 * 18 2 1 33 33 H 1.09000 * 113.54049 * 270.81294 * 19 18 2 34 34 H 1.09006 * 113.74223 * 139.94316 * 19 18 2 35 35 H 1.09005 * 113.61762 * 220.09174 * 20 19 18 36 36 H 1.09002 * 113.61932 * 89.18996 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.8849 1.7200 -0.8704 5 8 1.7812 2.2578 0.9670 6 6 2.2935 3.6107 0.8433 7 6 1.9102 4.4169 2.0859 8 6 2.9188 4.4046 3.2056 9 1 2.5863 4.3401 4.2312 10 6 4.2659 4.4754 2.9208 11 7 4.6661 4.7929 1.7090 12 14 5.5228 4.1208 4.2564 13 1 5.8520 2.6727 4.2545 14 1 6.7549 4.9088 3.9986 15 1 4.9610 4.4988 5.5780 16 6 0.4298 4.4630 2.4691 17 6 1.1044 5.7010 1.8749 18 6 2.1461 -0.9280 1.0601 19 6 2.0951 -2.0419 -0.0014 20 6 2.1461 -0.9280 -1.0603 21 1 -0.3633 0.4333 -0.9318 22 1 -0.3632 -1.0237 0.0906 23 1 -0.3634 0.5902 0.8412 24 1 1.8657 4.0817 -0.0416 25 1 3.3791 3.5809 0.7500 26 1 5.6110 4.9140 1.5263 27 1 -0.2712 3.9194 1.8357 28 1 0.1852 4.4841 3.5311 29 1 0.8472 5.9715 0.8507 30 1 1.3040 6.5364 2.5459 31 1 3.1586 -0.6477 1.3505 32 1 1.4940 -1.1081 1.9148 33 1 1.1596 -2.6014 -0.0008 34 1 2.9739 -2.6868 -0.0035 35 1 1.4939 -1.1078 -1.9150 36 1 3.1585 -0.6476 -1.3508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750737333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:15 Heat of formation + Delta-G solvation = -49.650154 kcal Electronic energy + Delta-G solvation = -17524.362047 eV Core-core repulsion = 14782.006524 eV Total energy + Delta-G solvation = -2742.355523 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33947 -38.18428 -36.55839 -34.99095 -32.24106 -29.74777 -26.75881 -25.64767 -25.45955 -24.42443 -21.37173 -20.87338 -19.16057 -18.32768 -16.88912 -16.56658 -15.69141 -15.53474 -14.90839 -14.58084 -13.98783 -13.54312 -13.22361 -13.00003 -12.32672 -12.28815 -11.95736 -11.78400 -11.61873 -11.24306 -11.01480 -10.99232 -10.79155 -10.52200 -10.46555 -10.31825 -10.23955 -9.82550 -9.64171 -9.27185 -8.89351 -8.78584 -8.15445 -6.11600 -4.15159 2.90401 3.25437 3.33140 3.35415 3.50382 4.33001 4.49135 4.61415 4.81411 4.83390 4.95693 5.29061 5.47598 5.54710 5.67341 5.77410 5.84789 5.87747 5.94119 6.05033 6.05936 6.09047 6.28109 6.32038 6.43173 6.47556 6.68416 6.75190 6.82864 6.98047 7.29362 7.44492 7.60604 7.91065 8.34311 8.61731 8.80818 9.44177 10.91551 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.007978 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.057951 B = 3508.817412 C = 4071.539172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 C 0.466 3.534 4 O -0.518 6.518 5 O -0.347 6.347 6 C 0.094 3.906 7 C 0.047 3.953 8 C -0.486 4.486 9 H 0.065 0.935 10 C 0.065 3.935 11 N -0.881 5.881 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.196 4.196 17 C -0.192 4.192 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.117 4.117 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.124 0.876 26 H 0.266 0.734 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -10.564 -2.800 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C 0.308 3.692 4 O -0.408 6.408 5 O -0.263 6.263 6 C 0.022 3.978 7 C 0.047 3.953 8 C -0.523 4.523 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.518 5.518 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.233 4.233 17 C -0.230 4.230 18 C -0.157 4.157 19 C -0.178 4.178 20 C -0.154 4.154 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.052 0.948 25 H 0.142 0.858 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.966 -10.439 -3.145 12.428 hybrid contribution 0.741 0.190 0.514 0.922 sum -5.225 -10.249 -2.631 11.801 Atomic orbital electron populations 1.21544 0.90848 1.02631 1.03093 1.21852 0.97403 0.88815 1.00430 1.23252 0.79079 0.87403 0.79432 1.90598 1.33788 1.78783 1.37638 1.86431 1.69209 1.23887 1.46763 1.23204 1.03618 0.75095 0.95932 1.18895 0.88869 0.93338 0.94204 1.20579 0.89690 1.50412 0.91648 0.91666 1.25040 0.98592 0.94340 0.95765 1.69745 1.16224 1.45889 1.19988 0.86505 0.80558 0.78611 0.81856 1.20383 1.21089 1.19692 1.22755 0.98150 1.02849 0.99575 1.23016 1.07742 0.92993 0.99282 1.22948 1.01868 0.94435 0.96464 1.22872 1.02236 0.96278 0.96414 1.22943 1.02268 0.94132 0.96077 0.92096 0.91407 0.90753 0.94781 0.85833 0.92369 0.91063 0.90393 0.91589 0.89853 0.89467 0.90179 0.89906 0.91006 0.90880 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.01 37.16 0.33 -1.22 16 2 C -0.08 -1.28 1.32 -154.85 -0.20 -1.48 16 3 C 0.47 9.73 6.95 36.01 0.25 9.98 16 4 O -0.52 -12.29 15.64 -18.75 -0.29 -12.58 16 5 O -0.35 -8.05 9.98 -39.27 -0.39 -8.44 16 6 C 0.09 2.41 5.30 37.16 0.20 2.60 16 7 C 0.05 1.22 2.02 -155.63 -0.31 0.90 16 8 C -0.49 -13.44 9.01 -34.44 -0.31 -13.75 16 9 H 0.07 1.78 7.84 -52.48 -0.41 1.36 16 10 C 0.07 1.79 5.14 -17.82 -0.09 1.70 16 11 N -0.88 -25.15 10.93 55.43 0.61 -24.54 16 12 Si 0.90 21.18 29.56 -169.99 -5.02 16.16 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 C -0.20 -4.33 9.76 -26.74 -0.26 -4.59 16 17 C -0.19 -4.44 9.88 -26.70 -0.26 -4.70 16 18 C -0.12 -1.62 7.23 -25.83 -0.19 -1.81 16 19 C -0.14 -1.52 7.74 -25.83 -0.20 -1.72 16 20 C -0.12 -1.54 6.95 -25.92 -0.18 -1.72 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.03 0.85 7.88 -51.93 -0.41 0.44 16 25 H 0.12 3.56 5.13 -51.93 -0.27 3.29 16 26 H 0.27 7.24 8.32 -40.82 -0.34 6.90 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 29 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 30 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 31 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 32 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.08 0.74 7.61 -51.93 -0.40 0.34 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.09 1.39 7.54 -51.93 -0.39 1.00 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -30.13 300.54 -7.41 -37.54 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.60 Total: 3.15 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.23 Total: -15.81 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.61 Total: -24.54 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.69 Total: -21.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.13 -7.41 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750737333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.108 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds