Wall clock time and date at job start Sun Mar 29 2020 22:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 112.84956 * 2 1 4 4 O 1.20824 * 120.00371 * 236.28983 * 3 2 1 5 5 O 1.34236 * 119.99703 * 56.28716 * 3 2 1 6 6 C 1.45194 * 117.00046 * 185.00895 * 5 3 2 7 7 C 1.53004 * 109.47062 * 184.71554 * 6 5 3 8 8 C 1.50701 * 115.56000 * 91.44194 * 7 6 5 9 9 H 1.08008 * 119.99822 * 219.69736 * 8 7 6 10 10 C 1.37874 * 120.00281 * 39.68802 * 8 7 6 11 11 N 1.31513 * 120.00217 * 12.19614 * 10 8 7 12 12 Si 1.86796 * 120.00192 * 192.18686 * 10 8 7 13 13 H 1.48508 * 109.47150 * 90.00535 * 12 10 8 14 14 H 1.48500 * 109.47502 * 210.00164 * 12 10 8 15 15 H 1.48503 * 109.47618 * 330.00792 * 12 10 8 16 16 C 1.52993 * 117.49861 * 305.75147 * 7 6 5 17 17 C 1.52999 * 60.02920 * 252.49608 * 16 7 6 18 18 C 1.53775 * 113.61831 * 131.19791 * 2 1 3 19 19 C 1.53960 * 87.01990 * 89.22990 * 18 2 1 20 20 C 1.53776 * 87.10830 * 25.36511 * 19 18 2 21 21 H 1.08995 * 109.47237 * 65.06056 * 1 2 3 22 22 H 1.09001 * 109.46464 * 185.05922 * 1 2 3 23 23 H 1.08998 * 109.47312 * 305.05555 * 1 2 3 24 24 H 1.08995 * 109.47498 * 64.71433 * 6 5 3 25 25 H 1.09002 * 109.46964 * 304.71665 * 6 5 3 26 26 H 0.96996 * 120.00409 * 174.98295 * 11 10 8 27 27 H 1.08995 * 117.49921 * 359.97438 * 16 7 6 28 28 H 1.09004 * 117.49908 * 145.00242 * 16 7 6 29 29 H 1.09003 * 117.49749 * 107.50384 * 17 16 7 30 30 H 1.09001 * 117.50362 * 252.51881 * 17 16 7 31 31 H 1.08996 * 113.61911 * 203.74709 * 18 2 1 32 32 H 1.09000 * 113.61582 * 334.65634 * 18 2 1 33 33 H 1.09000 * 113.54049 * 270.81294 * 19 18 2 34 34 H 1.09006 * 113.74223 * 139.94316 * 19 18 2 35 35 H 1.09005 * 113.61762 * 220.09174 * 20 19 18 36 36 H 1.09002 * 113.61932 * 89.18996 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.8849 1.7200 -0.8704 5 8 1.7812 2.2578 0.9670 6 6 2.2935 3.6107 0.8433 7 6 1.9102 4.4169 2.0859 8 6 2.9188 4.4046 3.2056 9 1 2.5863 4.3401 4.2312 10 6 4.2659 4.4754 2.9208 11 7 4.6661 4.7929 1.7090 12 14 5.5228 4.1208 4.2564 13 1 5.8520 2.6727 4.2545 14 1 6.7549 4.9088 3.9986 15 1 4.9610 4.4988 5.5780 16 6 0.4298 4.4630 2.4691 17 6 1.1044 5.7010 1.8749 18 6 2.1461 -0.9280 1.0601 19 6 2.0951 -2.0419 -0.0014 20 6 2.1461 -0.9280 -1.0603 21 1 -0.3633 0.4333 -0.9318 22 1 -0.3632 -1.0237 0.0906 23 1 -0.3634 0.5902 0.8412 24 1 1.8657 4.0817 -0.0416 25 1 3.3791 3.5809 0.7500 26 1 5.6110 4.9140 1.5263 27 1 -0.2712 3.9194 1.8357 28 1 0.1852 4.4841 3.5311 29 1 0.8472 5.9715 0.8507 30 1 1.3040 6.5364 2.5459 31 1 3.1586 -0.6477 1.3505 32 1 1.4940 -1.1081 1.9148 33 1 1.1596 -2.6014 -0.0008 34 1 2.9739 -2.6868 -0.0035 35 1 1.4939 -1.1078 -1.9150 36 1 3.1585 -0.6476 -1.3508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750737333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:15 Heat of formation + Delta-G solvation = -65.457831 kcal Electronic energy + Delta-G solvation = -17525.047520 eV Core-core repulsion = 14782.006524 eV Total energy + Delta-G solvation = -2743.040995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82731 -39.63688 -38.35835 -36.82201 -34.31572 -30.82957 -28.57722 -27.53371 -26.65166 -25.74917 -23.10569 -22.36386 -21.14174 -19.66357 -18.51782 -18.31544 -17.38978 -17.29766 -16.60462 -15.94081 -15.77523 -15.01967 -14.62505 -14.50157 -13.79865 -13.65791 -13.37178 -13.31587 -13.18977 -12.90195 -12.85889 -12.38639 -12.25430 -12.21266 -12.13801 -11.69208 -11.57488 -11.46382 -11.25434 -10.94577 -10.89580 -10.72865 -10.13646 -8.19565 -6.29513 1.25742 1.36640 1.39586 1.49382 1.89265 2.35185 2.92945 3.35956 3.47770 3.58149 3.79631 3.83275 3.97683 4.15794 4.37615 4.51275 4.54726 4.65906 4.72680 4.79819 4.83149 4.86772 4.90488 4.98328 5.02608 5.05692 5.13172 5.14748 5.27120 5.43083 5.49108 5.51133 5.75461 5.82367 6.27917 6.70571 6.87586 7.32403 8.82730 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.007978 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.057951 B = 3508.817412 C = 4071.539172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.090 4.090 3 C 0.455 3.545 4 O -0.556 6.556 5 O -0.353 6.353 6 C 0.104 3.896 7 C 0.007 3.993 8 C -0.504 4.504 9 H 0.063 0.937 10 C 0.017 3.983 11 N -0.910 5.910 12 Si 0.958 3.042 13 H -0.278 1.278 14 H -0.281 1.281 15 H -0.261 1.261 16 C -0.168 4.168 17 C -0.188 4.188 18 C -0.127 4.127 19 C -0.115 4.115 20 C -0.120 4.120 21 H 0.062 0.938 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.089 0.911 26 H 0.264 0.736 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -12.526 -2.142 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C 0.300 3.700 4 O -0.448 6.448 5 O -0.268 6.268 6 C 0.031 3.969 7 C 0.006 3.994 8 C -0.542 4.542 9 H 0.081 0.919 10 C -0.183 4.183 11 N -0.549 5.549 12 Si 0.783 3.217 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.185 1.185 16 C -0.205 4.205 17 C -0.226 4.226 18 C -0.164 4.164 19 C -0.152 4.152 20 C -0.157 4.157 21 H 0.081 0.919 22 H 0.125 0.875 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.513 -12.406 -2.476 14.714 hybrid contribution 1.199 0.804 0.265 1.468 sum -6.314 -11.603 -2.211 13.393 Atomic orbital electron populations 1.21590 0.88203 1.04982 1.02841 1.22302 0.99344 0.84897 1.02569 1.24661 0.78334 0.88922 0.78034 1.90569 1.35566 1.79762 1.38875 1.86450 1.69201 1.23230 1.47950 1.22792 1.01484 0.76666 0.96000 1.18999 0.90713 0.95433 0.94238 1.20873 0.90672 1.50469 0.92137 0.91869 1.25806 1.00465 0.94183 0.97814 1.69894 1.16295 1.46944 1.21761 0.85550 0.78238 0.78226 0.79689 1.20354 1.20667 1.18465 1.22780 0.95901 1.01371 1.00471 1.23015 1.06852 0.92625 1.00080 1.23022 1.00615 0.95233 0.97550 1.22851 1.04574 0.95025 0.92781 1.22988 1.01072 0.94527 0.97163 0.91875 0.87504 0.91748 0.95276 0.89340 0.92619 0.89248 0.89357 0.90486 0.89991 0.92098 0.88484 0.86498 0.89782 0.88722 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.01 71.98 0.65 -1.99 16 2 C -0.09 -2.63 1.32 -52.40 -0.07 -2.70 16 3 C 0.46 19.43 6.95 71.24 0.49 19.92 16 4 O -0.56 -27.53 15.64 21.97 0.34 -27.18 16 5 O -0.35 -16.67 9.98 -51.47 -0.51 -17.18 16 6 C 0.10 5.49 5.30 71.98 0.38 5.87 16 7 C 0.01 0.34 2.02 -52.91 -0.11 0.24 16 8 C -0.50 -28.19 9.01 25.60 0.23 -27.96 16 9 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 10 C 0.02 0.93 5.14 84.65 0.43 1.37 16 11 N -0.91 -53.67 10.93 21.45 0.23 -53.44 16 12 Si 0.96 43.97 29.56 68.60 2.03 46.00 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 16 C -0.17 -7.20 9.76 30.59 0.30 -6.90 16 17 C -0.19 -8.57 9.88 30.62 0.30 -8.27 16 18 C -0.13 -3.21 7.23 31.18 0.23 -2.99 16 19 C -0.12 -2.08 7.74 31.18 0.24 -1.84 16 20 C -0.12 -2.95 6.95 31.12 0.22 -2.73 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.11 1.55 7.31 -2.39 -0.02 1.53 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.03 1.51 7.88 -2.39 -0.02 1.49 16 25 H 0.09 5.36 5.13 -2.39 -0.01 5.34 16 26 H 0.26 14.89 8.32 -92.71 -0.77 14.12 16 27 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 29 H 0.08 3.29 8.03 -2.39 -0.02 3.27 16 30 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 33 H 0.12 1.39 7.61 -2.39 -0.02 1.38 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.09 1.90 8.10 -2.38 -0.02 1.88 16 36 H 0.07 2.00 7.54 -2.39 -0.02 1.98 16 Total: -1.00 -67.42 300.54 6.44 -60.98 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.05 Total: 18.81 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.30 Total: -27.98 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.23 Total: -53.44 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.17 Total: -44.37 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.42 6.44 -60.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750737333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.481 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds