Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46772 * 2 1 4 4 C 1.50696 * 115.55514 * 294.33389 * 3 2 1 5 5 O 1.20823 * 119.99618 * 99.30531 * 4 3 2 6 6 O 1.34230 * 119.99973 * 279.58363 * 4 3 2 7 7 C 1.45198 * 116.99751 * 174.62206 * 6 4 3 8 8 C 1.53007 * 109.47024 * 184.93317 * 7 6 4 9 9 C 1.50700 * 115.54583 * 280.29252 * 8 7 6 10 10 H 1.08006 * 119.99945 * 144.34633 * 9 8 7 11 11 C 1.37873 * 120.00355 * 324.34351 * 9 8 7 12 12 N 1.31514 * 120.00227 * 166.92734 * 11 9 8 13 13 Si 1.86799 * 119.99968 * 346.92921 * 11 9 8 14 14 H 1.48505 * 109.46949 * 96.21410 * 13 11 9 15 15 H 1.48504 * 109.47181 * 216.20842 * 13 11 9 16 16 H 1.48496 * 109.47184 * 336.21309 * 13 11 9 17 17 C 1.52995 * 117.50082 * 134.58768 * 8 7 6 18 18 C 1.52994 * 117.50085 * 65.96262 * 8 7 6 19 19 C 1.52998 * 117.51626 * 80.04244 * 3 2 1 20 20 C 1.52997 * 60.00277 * 107.47709 * 19 3 2 21 21 H 1.08998 * 109.47029 * 185.26577 * 1 2 3 22 22 H 1.08997 * 109.46430 * 305.26736 * 1 2 3 23 23 H 1.08994 * 109.47027 * 65.26754 * 1 2 3 24 24 H 1.09005 * 109.46953 * 240.00400 * 2 1 3 25 25 H 1.08995 * 109.47135 * 119.99924 * 2 1 3 26 26 H 1.08994 * 109.47757 * 304.93213 * 7 6 4 27 27 H 1.09003 * 109.47458 * 64.93287 * 7 6 4 28 28 H 0.96998 * 120.00679 * 179.97438 * 12 11 9 29 29 H 1.09005 * 117.49597 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.50061 * 145.01987 * 17 8 7 31 31 H 1.08994 * 117.49921 * 214.98130 * 18 8 7 32 32 H 1.09001 * 117.49731 * 359.97438 * 18 8 7 33 33 H 1.09004 * 117.50130 * 214.96794 * 19 3 2 34 34 H 1.09007 * 117.50112 * 359.97438 * 19 3 2 35 35 H 1.09004 * 117.49412 * 252.51104 * 20 19 3 36 36 H 1.08996 * 117.51973 * 107.48450 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7285 2.2421 -1.2388 5 8 0.7957 3.0101 -1.2433 6 8 2.4838 2.0970 -2.3388 7 6 2.0555 2.8069 -3.5309 8 6 2.9605 2.4259 -4.7042 9 6 4.2938 3.1268 -4.7508 10 1 5.1687 2.6003 -5.1029 11 6 4.3969 4.4401 -4.3440 12 7 5.5811 4.9738 -4.1383 13 14 2.8544 5.4615 -4.0852 14 1 2.4840 5.4428 -2.6472 15 1 3.1097 6.8606 -4.5123 16 1 1.7435 4.8930 -4.8900 17 6 2.2873 2.0981 -6.0384 18 6 2.9055 0.9789 -5.1981 19 6 2.0543 2.1872 1.3365 20 6 3.3684 1.7222 0.7058 21 1 -0.3633 -1.0233 0.0943 22 1 -0.3632 0.5934 0.8391 23 1 -0.3633 0.4299 -0.9334 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.0255 2.5371 -3.7641 27 1 2.1191 3.8810 -3.3567 28 1 5.6537 5.8979 -3.8525 29 1 1.1995 2.1543 -6.0803 30 1 2.8086 2.3894 -6.9502 31 1 3.8334 0.5340 -5.5571 32 1 2.2247 0.2982 -4.6868 33 1 1.8384 3.2555 1.3198 34 1 1.7001 1.6495 2.2161 35 1 3.8788 0.8785 1.1704 36 1 4.0172 2.4842 0.2739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750737860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = -31.493406 kcal Electronic energy + Delta-G solvation = -17601.968518 eV Core-core repulsion = 14860.400331 eV Total energy + Delta-G solvation = -2741.568187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29311 -37.83962 -36.68623 -35.32448 -32.26741 -31.96582 -27.92588 -25.60203 -24.52577 -22.89202 -22.30318 -21.47336 -19.44459 -19.09735 -17.08328 -16.72777 -16.35826 -15.79236 -15.23185 -14.47209 -14.06554 -13.86316 -13.48949 -13.03992 -12.82607 -12.54671 -12.29175 -12.06500 -11.59462 -11.53994 -11.23269 -11.07687 -10.84061 -10.57947 -10.49386 -10.43953 -10.12194 -9.88378 -9.67015 -9.49794 -9.32428 -8.75220 -8.41920 -6.22229 -4.14424 2.57906 3.02023 3.20786 3.31666 3.33310 3.69763 4.28769 4.52962 4.69327 4.79195 4.85545 5.06896 5.27548 5.34414 5.41211 5.52162 5.56327 5.61759 5.71333 5.81552 5.84886 5.91804 5.99198 6.04907 6.11125 6.13549 6.22510 6.40510 6.47301 6.60137 6.82109 7.05052 7.11400 7.64690 8.25986 8.41433 8.83029 9.41709 10.89944 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.008875 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.719608 B = 3154.015564 C = 3562.313424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.077 4.077 3 C -0.133 4.133 4 C 0.490 3.510 5 O -0.516 6.516 6 O -0.325 6.325 7 C 0.100 3.900 8 C 0.003 3.997 9 C -0.480 4.480 10 H 0.083 0.917 11 C 0.078 3.922 12 N -0.884 5.884 13 Si 0.877 3.123 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.263 1.263 17 C -0.198 4.198 18 C -0.177 4.177 19 C -0.149 4.149 20 C -0.152 4.152 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 -8.462 8.699 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.333 3.667 5 O -0.405 6.405 6 O -0.240 6.240 7 C 0.028 3.972 8 C 0.002 3.998 9 C -0.517 4.517 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.520 5.520 13 Si 0.709 3.291 14 H -0.207 1.207 15 H -0.219 1.219 16 H -0.188 1.188 17 C -0.236 4.236 18 C -0.214 4.214 19 C -0.186 4.186 20 C -0.189 4.189 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.693 -8.038 8.694 14.120 hybrid contribution -0.924 0.847 0.040 1.254 sum -8.617 -7.191 8.733 14.221 Atomic orbital electron populations 1.21762 0.95153 1.01504 1.02537 1.21015 0.96175 0.90941 1.03349 1.20958 1.05348 0.97097 0.89960 1.22491 0.79684 0.79924 0.84639 1.90607 1.29793 1.35873 1.84218 1.86587 1.51743 1.66231 1.19392 1.23245 0.96744 0.95155 0.82089 1.19265 0.96192 0.95905 0.88484 1.20301 0.91415 0.96332 1.43655 0.89942 1.24964 0.95679 0.97776 0.94105 1.69908 1.22889 1.14538 1.44683 0.87017 0.84283 0.79452 0.78386 1.20732 1.21940 1.18840 1.23201 0.97752 1.05308 0.97296 1.22709 1.01826 0.91889 1.05005 1.23085 1.00714 1.01070 0.93730 1.23176 0.90120 1.04060 1.01582 0.92330 0.92297 0.92746 0.90406 0.90449 0.92757 0.92327 0.92328 0.91191 0.88884 0.89442 0.90763 0.88156 0.87537 0.87443 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.72 37.16 0.36 -1.41 16 2 C -0.08 -0.93 5.81 -26.73 -0.16 -1.09 16 3 C -0.13 -2.01 1.97 -155.66 -0.31 -2.31 16 4 C 0.49 9.95 6.62 36.00 0.24 10.19 16 5 O -0.52 -11.60 16.74 -18.75 -0.31 -11.92 16 6 O -0.32 -7.38 10.21 -39.26 -0.40 -7.78 16 7 C 0.10 2.39 4.37 37.16 0.16 2.55 16 8 C 0.00 0.06 1.49 -155.66 -0.23 -0.17 16 9 C -0.48 -13.61 9.57 -34.44 -0.33 -13.94 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 11 C 0.08 2.27 5.42 -17.82 -0.10 2.17 16 12 N -0.88 -26.79 13.96 55.43 0.77 -26.02 16 13 Si 0.88 22.67 24.32 -169.99 -4.13 18.54 16 14 H -0.28 -7.36 6.91 56.52 0.39 -6.97 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.26 -6.49 6.67 56.52 0.38 -6.12 16 17 C -0.20 -4.15 9.88 -26.73 -0.26 -4.42 16 18 C -0.18 -3.66 9.94 -26.74 -0.27 -3.92 16 19 C -0.15 -1.90 9.88 -26.73 -0.26 -2.17 16 20 C -0.15 -2.04 9.92 -26.73 -0.27 -2.31 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.74 7.89 -51.93 -0.41 0.33 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.05 1.19 7.90 -51.93 -0.41 0.78 16 27 H 0.06 1.52 1.91 -51.93 -0.10 1.42 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 30 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -31.71 302.17 -6.52 -38.23 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.58 Total: 1.21 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.42 Total: -16.82 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.77 Total: -26.02 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.71 Total: -19.70 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.13 Total: 18.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.71 -6.52 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750737860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.739 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds