Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46772 * 2 1 4 4 C 1.50696 * 115.55514 * 294.33389 * 3 2 1 5 5 O 1.20823 * 119.99618 * 99.30531 * 4 3 2 6 6 O 1.34230 * 119.99973 * 279.58363 * 4 3 2 7 7 C 1.45198 * 116.99751 * 174.62206 * 6 4 3 8 8 C 1.53007 * 109.47024 * 184.93317 * 7 6 4 9 9 C 1.50700 * 115.54583 * 280.29252 * 8 7 6 10 10 H 1.08006 * 119.99945 * 144.34633 * 9 8 7 11 11 C 1.37873 * 120.00355 * 324.34351 * 9 8 7 12 12 N 1.31514 * 120.00227 * 166.92734 * 11 9 8 13 13 Si 1.86799 * 119.99968 * 346.92921 * 11 9 8 14 14 H 1.48505 * 109.46949 * 96.21410 * 13 11 9 15 15 H 1.48504 * 109.47181 * 216.20842 * 13 11 9 16 16 H 1.48496 * 109.47184 * 336.21309 * 13 11 9 17 17 C 1.52995 * 117.50082 * 134.58768 * 8 7 6 18 18 C 1.52994 * 117.50085 * 65.96262 * 8 7 6 19 19 C 1.52998 * 117.51626 * 80.04244 * 3 2 1 20 20 C 1.52997 * 60.00277 * 107.47709 * 19 3 2 21 21 H 1.08998 * 109.47029 * 185.26577 * 1 2 3 22 22 H 1.08997 * 109.46430 * 305.26736 * 1 2 3 23 23 H 1.08994 * 109.47027 * 65.26754 * 1 2 3 24 24 H 1.09005 * 109.46953 * 240.00400 * 2 1 3 25 25 H 1.08995 * 109.47135 * 119.99924 * 2 1 3 26 26 H 1.08994 * 109.47757 * 304.93213 * 7 6 4 27 27 H 1.09003 * 109.47458 * 64.93287 * 7 6 4 28 28 H 0.96998 * 120.00679 * 179.97438 * 12 11 9 29 29 H 1.09005 * 117.49597 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.50061 * 145.01987 * 17 8 7 31 31 H 1.08994 * 117.49921 * 214.98130 * 18 8 7 32 32 H 1.09001 * 117.49731 * 359.97438 * 18 8 7 33 33 H 1.09004 * 117.50130 * 214.96794 * 19 3 2 34 34 H 1.09007 * 117.50112 * 359.97438 * 19 3 2 35 35 H 1.09004 * 117.49412 * 252.51104 * 20 19 3 36 36 H 1.08996 * 117.51973 * 107.48450 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7285 2.2421 -1.2388 5 8 0.7957 3.0101 -1.2433 6 8 2.4838 2.0970 -2.3388 7 6 2.0555 2.8069 -3.5309 8 6 2.9605 2.4259 -4.7042 9 6 4.2938 3.1268 -4.7508 10 1 5.1687 2.6003 -5.1029 11 6 4.3969 4.4401 -4.3440 12 7 5.5811 4.9738 -4.1383 13 14 2.8544 5.4615 -4.0852 14 1 2.4840 5.4428 -2.6472 15 1 3.1097 6.8606 -4.5123 16 1 1.7435 4.8930 -4.8900 17 6 2.2873 2.0981 -6.0384 18 6 2.9055 0.9789 -5.1981 19 6 2.0543 2.1872 1.3365 20 6 3.3684 1.7222 0.7058 21 1 -0.3633 -1.0233 0.0943 22 1 -0.3632 0.5934 0.8391 23 1 -0.3633 0.4299 -0.9334 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.0255 2.5371 -3.7641 27 1 2.1191 3.8810 -3.3567 28 1 5.6537 5.8979 -3.8525 29 1 1.1995 2.1543 -6.0803 30 1 2.8086 2.3894 -6.9502 31 1 3.8334 0.5340 -5.5571 32 1 2.2247 0.2982 -4.6868 33 1 1.8384 3.2555 1.3198 34 1 1.7001 1.6495 2.2161 35 1 3.8788 0.8785 1.1704 36 1 4.0172 2.4842 0.2739 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750737860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = -50.126288 kcal Electronic energy + Delta-G solvation = -17602.776500 eV Core-core repulsion = 14860.400331 eV Total energy + Delta-G solvation = -2742.376170 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84064 -39.32782 -38.18834 -37.04123 -34.44946 -32.88406 -29.72550 -27.57633 -25.85354 -24.10280 -23.38426 -23.09774 -21.29113 -20.64304 -18.94685 -18.33383 -18.05049 -17.37109 -16.85157 -15.91179 -15.62411 -15.15330 -14.93426 -14.74401 -14.45140 -14.04840 -13.94926 -13.39290 -13.10454 -12.82663 -12.68474 -12.52951 -12.35979 -12.21639 -12.19718 -11.78532 -11.54357 -11.44658 -11.35633 -11.23058 -11.03649 -10.61964 -10.49507 -8.45414 -6.38937 1.02471 1.13347 1.20057 1.27561 1.53962 2.14486 2.60783 2.76200 3.30792 3.49721 3.60146 3.75130 3.81566 3.84682 3.87843 4.10360 4.32621 4.37002 4.49311 4.52847 4.64700 4.66125 4.83945 4.85104 4.89661 4.98042 5.03548 5.11017 5.13238 5.15038 5.33439 5.43116 5.47391 5.56932 6.18971 6.57959 6.64569 7.18928 8.70974 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.008875 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.719608 B = 3154.015564 C = 3562.313424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.152 4.152 4 C 0.481 3.519 5 O -0.545 6.545 6 O -0.340 6.340 7 C 0.100 3.900 8 C -0.039 4.039 9 C -0.481 4.481 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.930 5.930 13 Si 0.932 3.068 14 H -0.296 1.296 15 H -0.287 1.287 16 H -0.243 1.243 17 C -0.178 4.178 18 C -0.156 4.156 19 C -0.133 4.133 20 C -0.150 4.150 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -10.424 9.756 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.153 4.153 4 C 0.326 3.674 5 O -0.436 6.436 6 O -0.256 6.256 7 C 0.028 3.972 8 C -0.039 4.039 9 C -0.519 4.519 10 H 0.066 0.934 11 C -0.169 4.169 12 N -0.569 5.569 13 Si 0.762 3.238 14 H -0.225 1.225 15 H -0.214 1.214 16 H -0.167 1.167 17 C -0.215 4.215 18 C -0.193 4.193 19 C -0.170 4.170 20 C -0.187 4.187 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.519 -10.017 9.733 16.902 hybrid contribution -0.318 1.386 -0.280 1.449 sum -9.837 -8.631 9.453 16.144 Atomic orbital electron populations 1.21768 0.94989 1.02922 1.01128 1.21104 0.96248 0.88689 1.04845 1.21264 1.07261 0.98537 0.88253 1.23634 0.78791 0.79740 0.85202 1.90573 1.30995 1.37326 1.84663 1.86609 1.52759 1.66216 1.19999 1.23097 0.97563 0.93962 0.82605 1.19215 0.95254 0.98737 0.90735 1.20498 0.92590 0.96303 1.42489 0.93389 1.25596 0.97946 0.98934 0.94458 1.70012 1.24792 1.15057 1.47001 0.86110 0.81867 0.78283 0.77529 1.22464 1.21436 1.16669 1.23241 0.99271 1.03776 0.95226 1.22781 1.02315 0.90599 1.03573 1.23247 0.99637 1.00351 0.93721 1.23278 0.89750 1.04544 1.01131 0.89779 0.91898 0.95658 0.91111 0.86659 0.90853 0.94658 0.92219 0.88346 0.88839 0.89449 0.88152 0.90073 0.83432 0.83801 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.72 71.98 0.70 -2.39 16 2 C -0.07 -1.50 5.81 30.60 0.18 -1.32 16 3 C -0.15 -4.33 1.97 -52.93 -0.10 -4.43 16 4 C 0.48 19.43 6.62 71.23 0.47 19.91 16 5 O -0.54 -24.60 16.74 21.97 0.37 -24.23 16 6 O -0.34 -15.47 10.21 -51.42 -0.52 -15.99 16 7 C 0.10 4.72 4.37 71.98 0.31 5.04 16 8 C -0.04 -1.83 1.49 -52.93 -0.08 -1.91 16 9 C -0.48 -27.87 9.57 25.60 0.24 -27.63 16 10 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 11 C 0.03 1.77 5.42 84.65 0.46 2.23 16 12 N -0.93 -58.42 13.96 21.45 0.30 -58.12 16 13 Si 0.93 47.89 24.32 68.60 1.67 49.56 16 14 H -0.30 -15.78 6.91 99.48 0.69 -15.09 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.24 -11.48 6.67 99.48 0.66 -10.81 16 17 C -0.18 -6.98 9.88 30.59 0.30 -6.67 16 18 C -0.16 -6.07 9.94 30.59 0.30 -5.77 16 19 C -0.13 -3.06 9.88 30.59 0.30 -2.76 16 20 C -0.15 -3.74 9.92 30.59 0.30 -3.44 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.02 0.64 7.89 -2.39 -0.02 0.62 16 24 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.12 1.57 8.09 -2.39 -0.02 1.55 16 26 H 0.07 3.10 7.90 -2.39 -0.02 3.08 16 27 H 0.04 1.84 1.91 -2.39 0.00 1.83 16 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.10 3.33 8.09 -2.38 -0.02 3.32 16 30 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.15 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.14 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -71.56 302.17 6.20 -65.36 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.99 Total: 12.57 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.40 Total: -29.15 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.30 Total: -58.12 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.16 Total: -40.22 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.67 Total: 49.56 kcal Total: -71.56 6.20 -65.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750737860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.237 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds