Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48496 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47094 * 300.00217 * 3 2 1 6 6 H 1.48502 * 109.47158 * 60.00470 * 3 2 1 7 7 C 1.37873 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46847 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34232 * 117.00331 * 180.02562 * 12 11 10 14 14 O 1.20823 * 119.99271 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00410 * 179.97438 * 13 12 11 16 16 H 1.09004 * 115.55007 * 82.98782 * 15 13 12 17 17 C 1.52995 * 117.50060 * 297.32165 * 15 13 12 18 18 C 1.53004 * 60.00228 * 252.50963 * 17 15 13 19 19 H 1.08995 * 117.49411 * 252.51407 * 18 17 15 20 20 C 1.52996 * 117.49947 * 107.48722 * 18 17 15 21 21 C 1.52997 * 117.49652 * 185.17780 * 20 18 17 22 22 C 1.52996 * 117.49750 * 116.51590 * 20 18 17 23 23 H 0.97002 * 120.00226 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46857 * 60.00316 * 9 7 2 25 25 H 1.08995 * 109.47106 * 300.00642 * 9 7 2 26 26 H 1.08993 * 109.47049 * 60.00187 * 10 9 7 27 27 H 1.09003 * 109.47146 * 300.00118 * 10 9 7 28 28 H 1.08995 * 109.47041 * 300.00184 * 11 10 9 29 29 H 1.08999 * 109.46965 * 60.00308 * 11 10 9 30 30 H 1.09002 * 117.49752 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.50244 * 145.02046 * 17 15 13 32 32 H 1.08997 * 115.54966 * 330.84004 * 20 18 17 33 33 H 1.09002 * 117.49942 * 359.97438 * 21 20 18 34 34 H 1.08997 * 117.50569 * 145.02346 * 21 20 18 35 35 H 1.08996 * 117.49891 * 214.97267 * 22 20 18 36 36 H 1.08998 * 117.49935 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9111 -7.3311 -0.0016 14 8 0.7133 -7.4894 -0.0034 15 6 2.8291 -8.5262 -0.0016 16 1 3.2101 -8.8264 0.9746 17 6 3.7542 -8.7063 -1.2068 18 6 2.5498 -9.6316 -1.0219 19 1 2.7468 -10.6593 -0.7170 20 6 1.3598 -9.4390 -1.9641 21 6 0.1088 -10.2802 -1.7031 22 6 1.0070 -10.5952 -2.9019 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8535 -5.0451 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.6985 -7.9606 -1.9999 31 1 4.7436 -9.1254 -1.0236 32 1 1.2157 -8.4255 -2.3383 33 1 0.1337 -10.9711 -0.8604 34 1 -0.8584 -9.8204 -1.9060 35 1 0.6304 -10.3423 -3.8930 36 1 1.6229 -11.4929 -2.8480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751745909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = -56.637744 kcal Electronic energy + Delta-G solvation = -16277.013022 eV Core-core repulsion = 13534.354494 eV Total energy + Delta-G solvation = -2742.658528 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46344 -38.32205 -36.28154 -35.34649 -33.95465 -31.67425 -27.35018 -25.21224 -23.83607 -22.99247 -22.39947 -21.04328 -20.37211 -19.56911 -17.25333 -16.69713 -16.49267 -16.01576 -15.60728 -14.72346 -14.46639 -14.11910 -13.72656 -13.16073 -12.50355 -12.16747 -12.07425 -11.93356 -11.75558 -11.56282 -11.40858 -11.08773 -10.97737 -10.63913 -10.60284 -10.38582 -10.33421 -10.11128 -9.73453 -9.68605 -9.46777 -9.14399 -8.39050 -6.03560 -4.06552 2.37173 2.79906 3.29646 3.30113 3.37529 3.42041 3.92491 4.17645 4.43471 4.54763 4.61204 4.88665 4.99938 5.02934 5.07399 5.18451 5.32453 5.49903 5.51922 5.58840 5.65034 5.68075 5.78748 5.86252 6.00161 6.02824 6.09842 6.54102 6.55010 6.87220 6.99815 7.60669 7.71509 7.94805 8.01738 8.36257 8.99995 9.57821 11.07930 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.003774 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.657138 B = 7418.062655 C = 7655.400266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.355 6.355 13 C 0.485 3.515 14 O -0.500 6.500 15 C -0.156 4.156 16 H 0.141 0.859 17 C -0.150 4.150 18 C -0.091 4.091 19 H 0.117 0.883 20 C -0.124 4.124 21 C -0.162 4.162 22 C -0.180 4.180 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -20.549 -2.799 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.272 6.272 13 C 0.327 3.673 14 O -0.388 6.388 15 C -0.175 4.175 16 H 0.158 0.842 17 C -0.187 4.187 18 C -0.109 4.109 19 H 0.135 0.865 20 C -0.142 4.142 21 C -0.199 4.199 22 C -0.216 4.216 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.986 -20.423 -2.802 21.209 hybrid contribution 0.215 1.066 0.148 1.097 sum 5.201 -19.358 -2.654 20.219 Atomic orbital electron populations 1.69980 1.06089 1.26644 1.50670 1.25037 0.94883 0.99387 0.95211 0.86488 0.80097 0.83546 0.77601 1.19656 1.20971 1.20968 1.21216 0.93169 0.90672 1.50827 0.92364 1.19062 0.93858 0.90799 0.97669 1.21758 0.99899 0.91009 1.01948 1.23492 0.91253 0.83732 1.02036 1.86514 1.42595 1.15061 1.82991 1.22478 0.87775 0.84278 0.72750 1.90662 1.16583 1.86766 1.44763 1.21809 1.02838 0.94716 0.98159 0.84157 1.23135 0.95112 1.02198 0.98283 1.21888 0.96021 0.95312 0.97675 0.86504 1.21645 0.95319 0.96649 1.00635 1.22836 0.94975 1.02777 0.99328 1.22986 1.03965 0.99401 0.95297 0.92952 0.96254 0.96235 0.92142 0.92187 0.91576 0.91660 0.87711 0.87335 0.87985 0.88836 0.88690 0.88806 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 11 C 0.07 1.28 5.47 37.16 0.20 1.49 16 12 O -0.36 -6.12 10.22 -39.26 -0.40 -6.52 16 13 C 0.49 7.57 6.77 36.00 0.24 7.81 16 14 O -0.50 -9.03 15.49 -18.75 -0.29 -9.32 16 15 C -0.16 -1.74 6.24 -91.77 -0.57 -2.31 16 16 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.15 -1.37 9.95 -26.73 -0.27 -1.64 16 18 C -0.09 -0.87 5.84 -90.62 -0.53 -1.40 16 19 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.12 -1.37 4.30 -90.63 -0.39 -1.76 16 21 C -0.16 -1.69 10.25 -26.69 -0.27 -1.96 16 22 C -0.18 -1.60 10.25 -26.69 -0.27 -1.87 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 29 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.34 7.55 -51.93 -0.39 0.95 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -31.42 311.59 -8.69 -40.11 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.85 Total: -2.14 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.56 Total: -17.19 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.69 Total: -15.84 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.42 -8.69 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751745909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.532 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds