Wall clock time and date at job start Sun Mar 29 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48496 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47094 * 300.00217 * 3 2 1 6 6 H 1.48502 * 109.47158 * 60.00470 * 3 2 1 7 7 C 1.37873 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46847 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34232 * 117.00331 * 180.02562 * 12 11 10 14 14 O 1.20823 * 119.99271 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00410 * 179.97438 * 13 12 11 16 16 H 1.09004 * 115.55007 * 82.98782 * 15 13 12 17 17 C 1.52995 * 117.50060 * 297.32165 * 15 13 12 18 18 C 1.53004 * 60.00228 * 252.50963 * 17 15 13 19 19 H 1.08995 * 117.49411 * 252.51407 * 18 17 15 20 20 C 1.52996 * 117.49947 * 107.48722 * 18 17 15 21 21 C 1.52997 * 117.49652 * 185.17780 * 20 18 17 22 22 C 1.52996 * 117.49750 * 116.51590 * 20 18 17 23 23 H 0.97002 * 120.00226 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46857 * 60.00316 * 9 7 2 25 25 H 1.08995 * 109.47106 * 300.00642 * 9 7 2 26 26 H 1.08993 * 109.47049 * 60.00187 * 10 9 7 27 27 H 1.09003 * 109.47146 * 300.00118 * 10 9 7 28 28 H 1.08995 * 109.47041 * 300.00184 * 11 10 9 29 29 H 1.08999 * 109.46965 * 60.00308 * 11 10 9 30 30 H 1.09002 * 117.49752 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.50244 * 145.02046 * 17 15 13 32 32 H 1.08997 * 115.54966 * 330.84004 * 20 18 17 33 33 H 1.09002 * 117.49942 * 359.97438 * 21 20 18 34 34 H 1.08997 * 117.50569 * 145.02346 * 21 20 18 35 35 H 1.08996 * 117.49891 * 214.97267 * 22 20 18 36 36 H 1.08998 * 117.49935 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9111 -7.3311 -0.0016 14 8 0.7133 -7.4894 -0.0034 15 6 2.8291 -8.5262 -0.0016 16 1 3.2101 -8.8264 0.9746 17 6 3.7542 -8.7063 -1.2068 18 6 2.5498 -9.6316 -1.0219 19 1 2.7468 -10.6593 -0.7170 20 6 1.3598 -9.4390 -1.9641 21 6 0.1088 -10.2802 -1.7031 22 6 1.0070 -10.5952 -2.9019 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 0.8535 -5.0451 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.6985 -7.9606 -1.9999 31 1 4.7436 -9.1254 -1.0236 32 1 1.2157 -8.4255 -2.3383 33 1 0.1337 -10.9711 -0.8604 34 1 -0.8584 -9.8204 -1.9060 35 1 0.6304 -10.3423 -3.8930 36 1 1.6229 -11.4929 -2.8480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751745909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:48 Heat of formation + Delta-G solvation = -72.807992 kcal Electronic energy + Delta-G solvation = -16277.714216 eV Core-core repulsion = 13534.354494 eV Total energy + Delta-G solvation = -2743.359722 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68646 -39.26479 -37.64933 -36.19357 -35.92047 -33.67925 -29.21035 -26.53502 -24.86090 -24.47599 -23.18555 -22.19708 -21.99974 -20.64979 -18.73244 -18.29715 -17.84334 -17.33722 -16.70694 -16.49966 -15.75585 -15.40111 -14.83207 -14.54245 -14.06116 -13.85304 -13.78099 -13.25155 -12.85934 -12.60953 -12.51672 -12.40896 -12.31261 -12.21006 -12.07948 -11.90919 -11.67166 -11.44346 -11.38724 -11.21988 -10.97409 -10.59837 -10.44795 -8.23481 -6.35396 1.14291 1.40728 1.41178 1.54530 1.61124 2.40193 2.48110 3.10368 3.14110 3.37968 3.69591 3.80033 3.93586 3.96240 4.02917 4.16568 4.26005 4.29900 4.35833 4.39368 4.75857 4.79162 4.81848 4.91419 4.93736 5.02989 5.04616 5.14733 5.26073 5.28456 5.41748 5.51833 5.60349 5.77791 6.16948 6.71955 6.80836 7.34387 8.89046 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.003774 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.657138 B = 7418.062655 C = 7655.400266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.357 6.357 13 C 0.480 3.520 14 O -0.531 6.531 15 C -0.172 4.172 16 H 0.169 0.831 17 C -0.137 4.137 18 C -0.082 4.082 19 H 0.149 0.851 20 C -0.147 4.147 21 C -0.175 4.175 22 C -0.156 4.156 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -21.827 -2.835 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.004 3.996 12 O -0.274 6.274 13 C 0.324 3.676 14 O -0.420 6.420 15 C -0.191 4.191 16 H 0.186 0.814 17 C -0.173 4.173 18 C -0.099 4.099 19 H 0.167 0.833 20 C -0.165 4.165 21 C -0.212 4.212 22 C -0.193 4.193 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.299 -21.721 -2.843 23.090 hybrid contribution -0.563 1.413 0.129 1.526 sum 6.736 -20.308 -2.713 21.568 Atomic orbital electron populations 1.70114 1.07927 1.27913 1.51482 1.26037 0.95809 1.03614 0.94530 0.85309 0.79108 0.78302 0.77787 1.18304 1.20345 1.20337 1.21650 0.93769 0.91814 1.50855 0.91620 1.18945 0.94268 0.92585 0.95391 1.21450 0.98697 0.90350 1.02535 1.23095 0.91029 0.83964 1.01482 1.86509 1.41961 1.15541 1.83349 1.23509 0.88313 0.84470 0.71261 1.90647 1.18287 1.86934 1.46148 1.22025 1.03457 0.93158 1.00440 0.81405 1.23272 0.96421 1.01406 0.96251 1.22061 0.95330 0.96416 0.96143 0.83330 1.21657 0.96589 0.95797 1.02472 1.22879 0.94269 1.03101 1.00910 1.23069 1.02617 0.98972 0.94615 0.92652 0.98601 0.98533 0.91421 0.91526 0.92123 0.92363 0.89182 0.83979 0.91242 0.87722 0.90301 0.88618 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.97 5.53 30.60 0.17 -3.80 16 11 C 0.08 3.03 5.47 71.98 0.39 3.43 16 12 O -0.36 -12.29 10.22 -51.44 -0.53 -12.82 16 13 C 0.48 14.93 6.77 71.23 0.48 15.42 16 14 O -0.53 -19.68 15.49 21.97 0.34 -19.34 16 15 C -0.17 -3.47 6.24 -11.54 -0.07 -3.54 16 16 H 0.17 2.45 8.14 -2.38 -0.02 2.43 16 17 C -0.14 -2.11 9.95 30.59 0.30 -1.80 16 18 C -0.08 -1.34 5.84 -10.79 -0.06 -1.41 16 19 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 20 C -0.15 -3.13 4.30 -10.80 -0.05 -3.18 16 21 C -0.17 -3.52 10.25 30.62 0.31 -3.21 16 22 C -0.16 -2.48 10.25 30.62 0.31 -2.16 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.40 8.13 -2.39 -0.02 2.39 16 29 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.14 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.91 7.55 -2.39 -0.02 1.89 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -69.07 311.59 5.80 -63.27 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.04 Total: 8.98 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 2.64 Total: -29.30 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.11 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.19 Total: -32.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.07 5.80 -63.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751745909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.541 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds