Wall clock time and date at job start Sun Mar 29 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00253 * 2 1 4 4 H 1.48493 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47044 * 300.00463 * 3 2 1 6 6 H 1.48501 * 109.46899 * 60.00320 * 3 2 1 7 7 C 1.37879 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47242 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.47142 * 180.02562 * 11 10 9 13 13 C 1.34222 * 116.99867 * 180.02562 * 12 11 10 14 14 O 1.20830 * 120.00323 * 359.72425 * 13 12 11 15 15 C 1.50706 * 120.00024 * 180.02562 * 13 12 11 16 16 H 1.09003 * 115.54742 * 325.30825 * 15 13 12 17 17 C 1.52996 * 117.49739 * 110.97638 * 15 13 12 18 18 C 1.52999 * 117.50189 * 179.63690 * 15 13 12 19 19 H 1.08994 * 117.49722 * 144.99749 * 18 15 13 20 20 C 1.53002 * 117.49871 * 0.02562 * 18 15 13 21 21 C 1.52991 * 117.50271 * 128.61877 * 20 18 15 22 22 C 1.52997 * 60.00233 * 252.51190 * 21 20 18 23 23 H 0.96999 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47264 * 60.00244 * 9 7 2 25 25 H 1.09001 * 109.47115 * 300.00454 * 9 7 2 26 26 H 1.09009 * 109.46785 * 60.00122 * 10 9 7 27 27 H 1.08997 * 109.46751 * 300.00191 * 10 9 7 28 28 H 1.09009 * 109.46963 * 60.00436 * 11 10 9 29 29 H 1.09001 * 109.47306 * 300.00342 * 11 10 9 30 30 H 1.09009 * 117.49505 * 214.98171 * 17 15 13 31 31 H 1.08995 * 117.50234 * 359.97438 * 17 15 13 32 32 H 1.09003 * 115.54824 * 274.33158 * 20 18 15 33 33 H 1.09003 * 117.49811 * 0.02562 * 21 20 18 34 34 H 1.08996 * 117.50091 * 145.01874 * 21 20 18 35 35 H 1.09004 * 117.49614 * 252.50720 * 22 21 20 36 36 H 1.09000 * 117.49704 * 107.49224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4238 -6.0908 0.0007 13 6 1.9107 -7.3311 0.0008 14 8 0.7128 -7.4894 0.0054 15 6 2.8287 -8.5263 0.0020 16 1 3.7567 -8.4068 -0.5570 17 6 2.8726 -9.3820 1.2696 18 6 2.1827 -9.9132 0.0106 19 1 2.6858 -10.7061 -0.5427 20 6 0.6542 -9.9807 0.0168 21 6 -0.0183 -10.8626 -1.0370 22 6 -0.0859 -9.3390 -1.1585 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8533 -5.0451 -0.8898 29 1 0.8538 -5.0446 0.8903 30 1 3.8296 -9.8258 1.5442 31 1 2.2380 -9.0803 2.1028 32 1 0.1850 -9.9228 0.9990 33 1 0.6282 -11.3953 -1.7345 34 1 -0.9300 -11.3855 -0.7482 35 1 -1.0423 -8.8595 -0.9497 36 1 0.5160 -8.8690 -1.9362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751745926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:55 Heat of formation + Delta-G solvation = -48.785226 kcal Electronic energy + Delta-G solvation = -16415.482404 eV Core-core repulsion = 13673.164387 eV Total energy + Delta-G solvation = -2742.318017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55818 -38.31023 -36.02520 -35.20727 -33.95118 -31.67744 -27.39037 -25.28974 -23.77466 -22.91728 -22.36529 -20.95657 -20.35488 -19.38039 -17.51848 -16.50350 -16.22622 -15.89211 -15.60776 -14.78789 -14.46384 -14.15312 -13.75496 -13.06998 -12.54301 -12.18870 -12.13361 -11.82467 -11.64080 -11.37833 -11.22666 -11.11315 -10.97488 -10.62795 -10.57030 -10.39283 -10.31915 -9.94064 -9.70237 -9.58760 -9.24977 -9.12502 -8.38942 -6.03489 -4.06383 2.28655 2.87995 3.30162 3.37545 3.42010 3.45560 3.90171 4.42777 4.46505 4.54901 4.65575 4.95496 5.05187 5.10154 5.20502 5.32573 5.34604 5.46491 5.60511 5.62831 5.66655 5.70692 5.86484 6.03910 6.04393 6.17587 6.26721 6.55836 6.56808 6.90093 7.01273 7.60900 7.71873 7.95019 8.07304 8.36648 9.00170 9.57954 11.08026 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054266 B = 0.003811 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.848892 B = 7345.187785 C = 7707.780311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.358 6.358 13 C 0.480 3.520 14 O -0.494 6.494 15 C -0.164 4.164 16 H 0.132 0.868 17 C -0.143 4.143 18 C -0.089 4.089 19 H 0.117 0.883 20 C -0.117 4.117 21 C -0.197 4.197 22 C -0.124 4.124 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -20.741 -0.068 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.274 6.274 13 C 0.323 3.677 14 O -0.382 6.382 15 C -0.183 4.183 16 H 0.150 0.850 17 C -0.180 4.180 18 C -0.107 4.107 19 H 0.135 0.865 20 C -0.136 4.136 21 C -0.234 4.234 22 C -0.161 4.161 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.730 -20.613 -0.066 20.947 hybrid contribution 0.337 1.112 -0.016 1.162 sum 4.067 -19.500 -0.082 19.920 Atomic orbital electron populations 1.69976 1.06089 1.26639 1.50677 1.25035 0.94881 0.99380 0.95213 0.86489 0.80101 0.83552 0.77600 1.19661 1.20971 1.20970 1.21219 0.93168 0.90687 1.50818 0.92378 1.19057 0.93852 0.90796 0.97650 1.21760 0.99911 0.91097 1.01907 1.23457 0.91188 0.83653 1.01973 1.86481 1.42686 1.15132 1.83147 1.22455 0.87823 0.84240 0.73185 1.90698 1.16444 1.86298 1.44766 1.21807 1.01425 0.88977 1.06082 0.84969 1.23099 1.03054 1.00701 0.91161 1.21935 0.94052 0.93747 1.00966 0.86468 1.21531 0.91030 1.05359 0.95636 1.23218 1.02562 0.94996 1.02628 1.22605 1.01864 0.92456 0.99158 0.92956 0.96245 0.96263 0.92207 0.92205 0.91631 0.91668 0.87230 0.87948 0.87877 0.89321 0.89229 0.88818 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 11 C 0.07 1.32 5.47 37.16 0.20 1.52 16 12 O -0.36 -6.15 10.22 -39.24 -0.40 -6.55 16 13 C 0.48 7.29 7.58 36.01 0.27 7.56 16 14 O -0.49 -8.25 11.29 -18.75 -0.21 -8.47 16 15 C -0.16 -1.80 6.29 -91.77 -0.58 -2.38 16 16 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.14 -1.27 9.96 -26.70 -0.27 -1.54 16 18 C -0.09 -0.84 5.87 -90.58 -0.53 -1.37 16 19 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.12 -1.29 4.48 -90.62 -0.41 -1.70 16 21 C -0.20 -1.91 10.25 -26.74 -0.27 -2.19 16 22 C -0.12 -1.51 7.08 -26.73 -0.19 -1.70 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 30 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.24 8.06 -51.93 -0.42 0.83 16 36 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -30.75 305.62 -8.63 -39.38 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.87 Total: -2.00 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.47 Total: -17.37 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.61 Total: -15.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.75 -8.63 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751745926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.404 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds