Wall clock time and date at job start Sun Mar 29 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00253 * 2 1 4 4 H 1.48493 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47044 * 300.00463 * 3 2 1 6 6 H 1.48501 * 109.46899 * 60.00320 * 3 2 1 7 7 C 1.37879 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47242 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.47142 * 180.02562 * 11 10 9 13 13 C 1.34222 * 116.99867 * 180.02562 * 12 11 10 14 14 O 1.20830 * 120.00323 * 359.72425 * 13 12 11 15 15 C 1.50706 * 120.00024 * 180.02562 * 13 12 11 16 16 H 1.09003 * 115.54742 * 325.30825 * 15 13 12 17 17 C 1.52996 * 117.49739 * 110.97638 * 15 13 12 18 18 C 1.52999 * 117.50189 * 179.63690 * 15 13 12 19 19 H 1.08994 * 117.49722 * 144.99749 * 18 15 13 20 20 C 1.53002 * 117.49871 * 0.02562 * 18 15 13 21 21 C 1.52991 * 117.50271 * 128.61877 * 20 18 15 22 22 C 1.52997 * 60.00233 * 252.51190 * 21 20 18 23 23 H 0.96999 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47264 * 60.00244 * 9 7 2 25 25 H 1.09001 * 109.47115 * 300.00454 * 9 7 2 26 26 H 1.09009 * 109.46785 * 60.00122 * 10 9 7 27 27 H 1.08997 * 109.46751 * 300.00191 * 10 9 7 28 28 H 1.09009 * 109.46963 * 60.00436 * 11 10 9 29 29 H 1.09001 * 109.47306 * 300.00342 * 11 10 9 30 30 H 1.09009 * 117.49505 * 214.98171 * 17 15 13 31 31 H 1.08995 * 117.50234 * 359.97438 * 17 15 13 32 32 H 1.09003 * 115.54824 * 274.33158 * 20 18 15 33 33 H 1.09003 * 117.49811 * 0.02562 * 21 20 18 34 34 H 1.08996 * 117.50091 * 145.01874 * 21 20 18 35 35 H 1.09004 * 117.49614 * 252.50720 * 22 21 20 36 36 H 1.09000 * 117.49704 * 107.49224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 8 2.4238 -6.0908 0.0007 13 6 1.9107 -7.3311 0.0008 14 8 0.7128 -7.4894 0.0054 15 6 2.8287 -8.5263 0.0020 16 1 3.7567 -8.4068 -0.5570 17 6 2.8726 -9.3820 1.2696 18 6 2.1827 -9.9132 0.0106 19 1 2.6858 -10.7061 -0.5427 20 6 0.6542 -9.9807 0.0168 21 6 -0.0183 -10.8626 -1.0370 22 6 -0.0859 -9.3390 -1.1585 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8533 -5.0451 -0.8898 29 1 0.8538 -5.0446 0.8903 30 1 3.8296 -9.8258 1.5442 31 1 2.2380 -9.0803 2.1028 32 1 0.1850 -9.9228 0.9990 33 1 0.6282 -11.3953 -1.7345 34 1 -0.9300 -11.3855 -0.7482 35 1 -1.0423 -8.8595 -0.9497 36 1 0.5160 -8.8690 -1.9362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751745926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:55 Heat of formation + Delta-G solvation = -64.465732 kcal Electronic energy + Delta-G solvation = -16416.162361 eV Core-core repulsion = 13673.164387 eV Total energy + Delta-G solvation = -2742.997975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71707 -39.34897 -37.32584 -36.07966 -35.89703 -33.67549 -29.22308 -26.60682 -24.89946 -24.33613 -23.27148 -22.16937 -21.89157 -20.46276 -18.81624 -18.40220 -17.58847 -17.18761 -16.53049 -16.44889 -15.78563 -15.48608 -15.03079 -14.43292 -14.00394 -13.85633 -13.71913 -13.31403 -12.86010 -12.54884 -12.47427 -12.34803 -12.27228 -12.11674 -12.07795 -11.88037 -11.59457 -11.39430 -11.31625 -11.23133 -10.78903 -10.59622 -10.23841 -8.23349 -6.35154 1.14885 1.40741 1.41119 1.54760 1.67521 2.40496 2.61919 3.08462 3.10494 3.57361 3.73243 3.82622 3.96330 3.98660 4.06042 4.21381 4.25762 4.39779 4.42908 4.51862 4.77498 4.80050 4.85211 4.86755 4.97810 5.05746 5.09811 5.20180 5.31923 5.35083 5.43658 5.58486 5.61173 5.78199 6.17558 6.79617 6.84009 7.34561 8.89163 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054266 B = 0.003811 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.848892 B = 7345.187785 C = 7707.780311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.082 3.918 12 O -0.362 6.362 13 C 0.471 3.529 14 O -0.515 6.515 15 C -0.178 4.178 16 H 0.155 0.845 17 C -0.128 4.128 18 C -0.082 4.082 19 H 0.148 0.852 20 C -0.125 4.125 21 C -0.171 4.171 22 C -0.148 4.148 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -22.050 -0.024 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.008 3.992 12 O -0.279 6.279 13 C 0.315 3.685 14 O -0.404 6.404 15 C -0.197 4.197 16 H 0.172 0.828 17 C -0.165 4.165 18 C -0.100 4.100 19 H 0.166 0.834 20 C -0.143 4.143 21 C -0.208 4.208 22 C -0.186 4.186 23 H 0.073 0.927 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.900 -21.946 -0.020 22.725 hybrid contribution -0.410 1.451 -0.020 1.508 sum 5.490 -20.495 -0.040 21.218 Atomic orbital electron populations 1.70108 1.07911 1.27907 1.51473 1.26030 0.95809 1.03587 0.94533 0.85314 0.79096 0.78334 0.77798 1.18349 1.20333 1.20323 1.21653 0.93748 0.91863 1.50865 0.91689 1.18938 0.94256 0.92559 0.95386 1.21453 0.98715 0.90567 1.02406 1.23037 0.90914 0.83807 1.01440 1.86471 1.42122 1.15675 1.83665 1.23440 0.88484 0.84341 0.72187 1.90710 1.17698 1.86339 1.45654 1.21968 1.01618 0.87447 1.08624 0.82771 1.23272 1.04260 0.98893 0.90029 1.22112 0.92927 0.93260 1.01684 0.83398 1.21615 0.92393 1.05430 0.94859 1.23276 1.02877 0.93038 1.01590 1.22461 1.01201 0.94711 1.00186 0.92651 0.98549 0.98562 0.91610 0.91601 0.92225 0.92265 0.83834 0.89134 0.89072 0.87303 0.88351 0.91052 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.39 4.97 29.85 0.15 1.53 16 10 C -0.09 -4.01 5.53 30.60 0.17 -3.85 16 11 C 0.08 3.14 5.47 71.98 0.39 3.54 16 12 O -0.36 -12.37 10.22 -51.34 -0.52 -12.90 16 13 C 0.47 14.16 7.58 71.24 0.54 14.70 16 14 O -0.52 -17.66 11.29 21.95 0.25 -17.41 16 15 C -0.18 -3.52 6.29 -11.54 -0.07 -3.59 16 16 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.13 -1.89 9.96 30.62 0.30 -1.58 16 18 C -0.08 -1.32 5.87 -10.77 -0.06 -1.38 16 19 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 20 C -0.12 -2.61 4.48 -10.80 -0.05 -2.65 16 21 C -0.17 -3.00 10.25 30.59 0.31 -2.69 16 22 C -0.15 -3.67 7.08 30.59 0.22 -3.45 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 27 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.06 2.32 8.13 -2.39 -0.02 2.31 16 30 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.03 8.06 -2.38 -0.02 2.01 16 36 H 0.07 1.93 7.96 -2.39 -0.02 1.92 16 Total: -1.00 -67.42 305.62 5.67 -61.75 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.04 Total: 9.26 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 2.60 Total: -30.01 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.28 Total: -30.31 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -67.42 5.67 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751745926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.713 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds