Wall clock time and date at job start Sun Mar 29 2020 22:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.50625 * 2 1 4 4 C 1.54983 * 110.56733 * 237.08281 * 2 1 3 5 5 C 1.55134 * 102.22454 * 204.16846 * 4 2 1 6 6 C 1.51842 * 104.31621 * 37.93393 * 5 4 2 7 7 C 1.33081 * 126.34010 * 156.13186 * 6 5 4 8 8 C 1.46953 * 120.00168 * 179.69422 * 7 6 5 9 9 O 1.21534 * 119.99855 * 359.97438 * 8 7 6 10 10 O 1.34799 * 120.00102 * 180.02562 * 8 7 6 11 11 C 1.45194 * 116.99773 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46979 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.51449 * 107.31714 * 335.87513 * 6 5 4 22 22 H 1.08999 * 109.47230 * 298.69953 * 1 2 3 23 23 H 1.08996 * 109.47066 * 58.70158 * 1 2 3 24 24 H 1.08998 * 109.47092 * 178.69983 * 1 2 3 25 25 H 1.08999 * 110.83975 * 322.56332 * 4 2 1 26 26 H 1.09002 * 110.83277 * 85.94449 * 4 2 1 27 27 H 1.08999 * 110.58026 * 279.19480 * 5 4 2 28 28 H 1.09003 * 110.41314 * 156.59555 * 5 4 2 29 29 H 1.07996 * 119.99905 * 359.69020 * 7 6 5 30 30 H 1.09001 * 109.47510 * 60.00193 * 11 10 8 31 31 H 1.09001 * 109.47429 * 299.99899 * 11 10 8 32 32 H 1.09001 * 109.47002 * 299.99655 * 12 11 10 33 33 H 1.08993 * 109.46955 * 60.00092 * 12 11 10 34 34 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.98362 * 119.94832 * 21 6 5 36 36 H 1.09003 * 109.97993 * 241.20618 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0209 0.0000 4 6 2.0745 -0.7885 -1.2181 5 6 3.4850 -1.2127 -0.7310 6 6 3.2912 -1.5434 0.7382 7 6 4.0545 -2.3490 1.4726 8 6 3.7412 -2.5659 2.8919 9 8 2.7852 -2.0091 3.3951 10 8 4.5146 -3.3816 3.6359 11 6 4.1461 -3.5484 5.0303 12 6 5.1318 -4.5027 5.7077 13 6 4.7490 -4.6764 7.1548 14 1 3.8888 -4.1577 7.5519 15 6 5.4973 -5.4967 7.9722 16 7 6.5449 -6.1279 7.4889 17 14 5.0231 -5.7114 9.7662 18 1 4.0839 -6.8543 9.8966 19 1 6.2418 -5.9779 10.5718 20 1 4.3667 -4.4728 10.2565 21 6 2.0720 -0.7815 1.2147 22 1 -0.3633 0.4935 0.9014 23 1 -0.3633 0.5338 -0.8781 24 1 -0.3633 -1.0274 -0.0233 25 1 1.4534 -1.6601 -1.4249 26 1 2.1432 -0.1465 -2.0962 27 1 4.1930 -0.3920 -0.8463 28 1 3.8275 -2.0917 -1.2772 29 1 4.9041 -2.8435 1.0255 30 1 3.1394 -3.9617 5.0932 31 1 4.1736 -2.5810 5.5318 32 1 5.1038 -5.4701 5.2062 33 1 6.1386 -4.0898 5.6449 34 1 7.0716 -6.7047 8.0640 35 1 1.3159 -1.4779 1.5774 36 1 2.3522 -0.0894 2.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754197030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:53 Heat of formation + Delta-G solvation = -104.632872 kcal Electronic energy + Delta-G solvation = -16249.668100 eV Core-core repulsion = 13504.928348 eV Total energy + Delta-G solvation = -2744.739753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91398 -38.51712 -35.94109 -33.31132 -32.89340 -30.39724 -29.90138 -27.33452 -25.29686 -24.23127 -21.57346 -20.62804 -20.33180 -18.43542 -17.29101 -16.23336 -15.91728 -15.66862 -15.62786 -14.55100 -14.37538 -13.90646 -13.37728 -13.24669 -12.84869 -12.58652 -12.38570 -12.30288 -11.79631 -11.47956 -11.19961 -11.09041 -11.00914 -10.81835 -10.78009 -10.68402 -10.63706 -10.01438 -9.60207 -9.54775 -9.26563 -9.17992 -8.41936 -6.08028 -4.12263 1.29023 3.28515 3.30109 3.30763 3.36403 3.41868 4.25754 4.41438 4.42539 4.66462 4.94981 5.03878 5.15332 5.25652 5.28407 5.32011 5.42816 5.53299 5.62212 5.65764 5.75090 5.82503 5.91110 6.07744 6.14051 6.15070 6.18914 6.36001 6.42140 6.69222 7.08072 7.59976 7.66451 7.90216 8.24513 8.36183 8.93413 9.51921 11.03585 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058439 B = 0.003725 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.013448 B = 7514.675333 C = 7913.502885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.034 4.034 7 C -0.190 4.190 8 C 0.488 3.512 9 O -0.521 6.521 10 O -0.355 6.355 11 C 0.076 3.924 12 C 0.024 3.976 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.094 4.094 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 10.766 -17.696 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.034 4.034 7 C -0.209 4.209 8 C 0.334 3.666 9 O -0.414 6.414 10 O -0.271 6.271 11 C 0.004 3.996 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.130 4.130 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.800 10.780 -17.445 21.940 hybrid contribution -0.154 -0.230 1.155 1.187 sum -7.954 10.551 -16.290 20.975 Atomic orbital electron populations 1.21790 0.94679 1.01996 1.01665 1.22075 0.95928 0.99280 0.94801 0.90536 1.22653 0.95303 1.00118 0.97602 1.21626 0.98304 1.02106 0.91559 1.22961 0.93663 0.91392 0.95412 1.21338 1.03646 1.04841 0.91079 1.21354 0.80483 0.76701 0.88023 1.90784 1.28773 1.47736 1.74073 1.86615 1.53802 1.60369 1.26334 1.23595 1.00667 1.01000 0.74371 1.19167 0.94065 0.93797 0.94283 1.20993 1.13100 1.28267 0.94041 0.92270 1.24986 0.94823 0.95382 0.99002 1.69973 1.17153 1.29590 1.36179 0.86470 0.77976 0.78616 0.84231 1.20487 1.21062 1.19722 1.21465 0.95355 0.98777 0.97437 0.92441 0.92714 0.92497 0.90929 0.91011 0.89263 0.90143 0.84210 0.92430 0.92422 0.95376 0.95366 0.92729 0.89238 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.12 37.16 0.34 -0.81 16 2 C -0.10 -0.89 3.49 -88.90 -0.31 -1.20 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.89 6.39 -24.55 -0.16 -1.05 16 5 C -0.10 -0.82 6.66 -26.19 -0.17 -0.99 16 6 C -0.03 -0.40 6.15 -100.21 -0.62 -1.01 16 7 C -0.19 -2.67 10.06 -37.85 -0.38 -3.06 16 8 C 0.49 9.10 7.90 34.26 0.27 9.37 16 9 O -0.52 -10.54 13.90 -19.29 -0.27 -10.81 16 10 O -0.35 -7.56 10.23 -40.76 -0.42 -7.97 16 11 C 0.08 1.77 5.42 37.16 0.20 1.98 16 12 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 13 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.09 -1.11 4.40 -26.85 -0.12 -1.23 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 25 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.20 7.35 -51.93 -0.38 0.82 16 36 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -31.34 304.52 -7.70 -39.04 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -5.81 Total: -4.18 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.51 Total: -11.29 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.69 Total: -18.78 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.34 -7.70 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754197030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.590 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds